Variant report

Variant	rs9535517
Chromosome Location	chr13:51452275-51452276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1041017	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs11616586	0.91[EUR][1000 genomes]
rs11617765	0.91[EUR][1000 genomes]
rs17074964	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs7318931	0.90[CEU][hapmap]
rs7323313	0.92[EUR][1000 genomes]
rs7324091	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7335786	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs74080784	0.82[EUR][1000 genomes]
rs7491820	0.92[EUR][1000 genomes]
rs7992624	0.91[EUR][1000 genomes]
rs7993060	0.91[EUR][1000 genomes]
rs8000150	0.91[EUR][1000 genomes]
rs8001874	0.92[EUR][1000 genomes]
rs8002319	0.88[EUR][1000 genomes]
rs9526698	0.91[EUR][1000 genomes]
rs9526703	0.82[EUR][1000 genomes]
rs9526706	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs9526709	0.90[CEU][hapmap]
rs9535519	0.91[EUR][1000 genomes]
rs9535522	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9591371	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	nsv526999	chr13:51440933-51452751	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51451400-51452400	Enhancers	Fetal Thymus	thymus
2	chr13:51451400-51453000	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links