Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51473891..51476765-chr13:51478767..51481533,2	MCF-7	breast:
2	chr13:51473931..51480255-chr13:51481989..51485518,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction
ENSG00000136104	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1041017	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11616586	0.92[EUR][1000 genomes]
rs11617765	0.92[EUR][1000 genomes]
rs11843914	0.92[EUR][1000 genomes]
rs17074964	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7318931	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7323313	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7324091	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7335786	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7337118	0.84[EUR][1000 genomes]
rs74080784	0.95[EUR][1000 genomes]
rs7491820	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7992624	0.92[EUR][1000 genomes]
rs7993060	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8000150	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8001874	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8002319	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9526698	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9526703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9526706	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9526709	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9526712	0.92[EUR][1000 genomes]
rs9535517	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs9535519	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535537	0.92[EUR][1000 genomes]
rs9591371	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51465600-51474600	Weak transcription	Aorta	Aorta
2	chr13:51469000-51483400	Weak transcription	Fetal Lung	lung
3	chr13:51471600-51474600	Weak transcription	Fetal Thymus	thymus
4	chr13:51472000-51478200	Weak transcription	Thymus	Thymus
5	chr13:51472400-51474600	Weak transcription	Dnd41	blood
6	chr13:51472800-51474600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:51472800-51483400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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