Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1041017	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11616586	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11617765	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843914	0.87[EUR][1000 genomes]
rs17074964	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7318931	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7323313	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7324091	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7335786	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7337118	0.82[EUR][1000 genomes]
rs74080784	0.90[EUR][1000 genomes]
rs7491820	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7992845	0.83[AMR][1000 genomes]
rs7993060	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000150	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001874	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8002319	0.97[EUR][1000 genomes]
rs9526698	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526703	0.90[EUR][1000 genomes]
rs9526706	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9526709	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9526712	0.87[EUR][1000 genomes]
rs9535517	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs9535519	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535522	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9535537	0.87[EUR][1000 genomes]
rs9591371	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv983515	chr13:51456419-51463427	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51455800-51458000	Weak transcription	Fetal Thymus	thymus
2	chr13:51457000-51458800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:51457200-51464600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:51457400-51458200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr13:51457400-51459200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr13:51457600-51458600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr13:51457600-51459000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:51457600-51459200	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search: