Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51452163..51454609-chr13:51458977..51461439,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1041017	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11617765	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843914	0.87[EUR][1000 genomes]
rs17074964	0.97[EUR][1000 genomes]
rs7318931	0.87[EUR][1000 genomes]
rs7323313	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7324091	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7335786	0.90[EUR][1000 genomes]
rs7337118	0.82[EUR][1000 genomes]
rs74080784	0.90[EUR][1000 genomes]
rs7491820	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7992624	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7992845	0.81[AMR][1000 genomes]
rs7993060	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000150	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001874	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8002319	0.97[EUR][1000 genomes]
rs9526698	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526703	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9526706	0.90[EUR][1000 genomes]
rs9526709	0.87[EUR][1000 genomes]
rs9526712	0.87[EUR][1000 genomes]
rs9535517	0.91[EUR][1000 genomes]
rs9535519	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9535522	0.92[EUR][1000 genomes]
rs9535537	0.87[EUR][1000 genomes]
rs9591371	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51452400-51454600	Weak transcription	Fetal Thymus	thymus
2	chr13:51453000-51454800	Weak transcription	Thymus	Thymus

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