Variant report

Variant	rs9526712
Chromosome Location	chr13:51550423-51550424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1041017	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11616586	0.87[EUR][1000 genomes]
rs11617765	0.87[EUR][1000 genomes]
rs11843914	1.00[EUR][1000 genomes]
rs17074964	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7318931	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7323313	0.85[EUR][1000 genomes]
rs7324091	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7335786	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7337118	0.91[EUR][1000 genomes]
rs74080784	0.97[EUR][1000 genomes]
rs7491820	0.85[EUR][1000 genomes]
rs7992624	0.87[EUR][1000 genomes]
rs7993060	0.87[EUR][1000 genomes]
rs8000150	0.87[EUR][1000 genomes]
rs8001874	0.85[EUR][1000 genomes]
rs8002319	0.84[EUR][1000 genomes]
rs9526698	0.87[EUR][1000 genomes]
rs9526703	0.97[EUR][1000 genomes]
rs9526706	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9526709	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9535517	0.90[CEU][hapmap]
rs9535519	0.87[EUR][1000 genomes]
rs9535522	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9535537	1.00[EUR][1000 genomes]
rs9591371	0.87[EUR][1000 genomes]

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
2	chr13:51503600-51551800	Strong transcription	Dnd41	blood
3	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
4	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr13:51518000-51551200	Weak transcription	Placenta	Placenta
6	chr13:51518600-51552000	Weak transcription	Fetal Brain Female	brain
7	chr13:51523600-51555200	Weak transcription	HSMMtube	muscle
8	chr13:51523800-51550600	Weak transcription	HSMM	muscle
9	chr13:51524800-51552200	Weak transcription	Colonic Mucosa	Colon
10	chr13:51530600-51563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:51532600-51551400	Strong transcription	Primary B cells from peripheral blood	blood
12	chr13:51533400-51552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:51535800-51563200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:51537000-51550600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr13:51537800-51552000	Strong transcription	Primary T cells from cord blood	blood
16	chr13:51539200-51565400	Weak transcription	Esophagus	oesophagus
17	chr13:51539600-51564600	Weak transcription	Brain Angular Gyrus	brain
18	chr13:51539600-51564800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:51539800-51550600	Weak transcription	Left Ventricle	heart
20	chr13:51539800-51551200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:51539800-51551600	Weak transcription	Aorta	Aorta
22	chr13:51539800-51551800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr13:51539800-51552400	Weak transcription	GM12878-XiMat	blood
24	chr13:51539800-51553200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:51539800-51553400	Weak transcription	Fetal Kidney	kidney
26	chr13:51539800-51555000	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:51540200-51552400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:51540400-51552600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:51540600-51551200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:51540600-51559000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr13:51540800-51555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr13:51541200-51553200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr13:51542200-51565400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:51544000-51551800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr13:51544600-51552800	Weak transcription	Brain Germinal Matrix	brain
36	chr13:51544800-51563400	Weak transcription	Colon Smooth Muscle	Colon
37	chr13:51545400-51552800	Weak transcription	Pancreas	Pancrea
38	chr13:51545400-51558000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr13:51546000-51554600	Weak transcription	Fetal Stomach	stomach
40	chr13:51546200-51551200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr13:51546200-51552800	Weak transcription	Liver	Liver
42	chr13:51547600-51551400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr13:51548000-51551600	Strong transcription	Thymus	Thymus
44	chr13:51548200-51551200	Strong transcription	Primary B cells from cord blood	blood
45	chr13:51548200-51556000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr13:51548400-51551600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr13:51548400-51553000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:51548600-51550600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:51548600-51551400	Strong transcription	Primary hematopoietic stem cells	blood
50	chr13:51548600-51551600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links