Variant report

Variant	rs9541837
Chromosome Location	chr13:69808745-69808746
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1446383	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61954560	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9317801	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9317803	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9529551	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9529552	0.92[EUR][1000 genomes]
rs9529576	0.82[CEU][hapmap]
rs9529578	0.83[AMR][1000 genomes]
rs9541834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9541848	0.86[EUR][1000 genomes]
rs9541878	0.84[AMR][1000 genomes]
rs9541889	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9541912	0.86[AMR][1000 genomes]
rs9599436	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9599437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900465	chr13:69568612-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900473	chr13:69652578-69812252	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900478	chr13:69759676-69812252	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69807200-69809000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:69807400-69810000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:69807800-69809200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:69807800-69809200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:69807800-69809600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:69808000-69809200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:69808200-69809800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:69808600-69809000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:69808600-69809000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:69808600-69809400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr13:69808600-69809600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:69808600-69809600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:69808600-69809800	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links