Variant report
| Variant | rs9317803 |
|---|---|
| Chromosome Location | chr13:69854967-69854968 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1446383 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17609165 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61954560 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9317801 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9317819 | 0.82[EUR][1000 genomes] |
| rs9529551 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9529552 | 0.86[EUR][1000 genomes] |
| rs9529577 | 0.88[EUR][1000 genomes] |
| rs9529578 | 0.90[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9541834 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9541837 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9541848 | 0.84[EUR][1000 genomes] |
| rs9541878 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9541889 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9541912 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9541941 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9541942 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9541944 | 0.84[EUR][1000 genomes] |
| rs9541945 | 0.84[EUR][1000 genomes] |
| rs9541946 | 0.82[EUR][1000 genomes] |
| rs9541948 | 0.82[EUR][1000 genomes] |
| rs9599436 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs9599437 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9599464 | 0.84[EUR][1000 genomes] |
| rs9599466 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049303 | chr13:69238676-69923558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038918 | chr13:69251052-69919763 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv541829 | chr13:69251052-69919763 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv900479 | chr13:69824819-69984297 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:69839600-69856400 | Weak transcription | K562 | blood |
| 2 | chr13:69854000-69855000 | Enhancers | Fetal Lung | lung |
