Variant report

Variant	rs9599466
Chromosome Location	chr13:70057886-70057887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17609165	0.88[EUR][1000 genomes]
rs9317803	0.84[EUR][1000 genomes]
rs9317819	0.90[EUR][1000 genomes]
rs9529577	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9529578	0.88[EUR][1000 genomes]
rs9529590	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541889	0.84[EUR][1000 genomes]
rs9541912	0.82[EUR][1000 genomes]
rs9541941	0.88[EUR][1000 genomes]
rs9541942	0.88[EUR][1000 genomes]
rs9541944	0.88[EUR][1000 genomes]
rs9541945	0.88[EUR][1000 genomes]
rs9541946	0.90[EUR][1000 genomes]
rs9541948	0.90[EUR][1000 genomes]
rs9599464	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3400765	chr13:70051000-70083182	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70057600-70058400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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