Variant report

Variant	rs9541912
Chromosome Location	chr13:69929326-69929327
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1446383	0.83[AMR][1000 genomes]
rs17609165	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61954560	0.86[AMR][1000 genomes]
rs9317801	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9317803	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9317819	0.92[EUR][1000 genomes]
rs9529551	0.93[AMR][1000 genomes]
rs9529576	1.00[CEU][hapmap]
rs9529577	0.86[EUR][1000 genomes]
rs9529578	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9529590	0.80[EUR][1000 genomes]
rs9541834	0.86[AMR][1000 genomes]
rs9541837	0.82[CEU][hapmap];0.86[AMR][1000 genomes]
rs9541878	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9541889	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9541941	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541942	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541944	0.94[EUR][1000 genomes]
rs9541945	0.94[EUR][1000 genomes]
rs9541946	0.92[EUR][1000 genomes]
rs9541948	0.92[EUR][1000 genomes]
rs9599436	0.83[AMR][1000 genomes]
rs9599437	0.86[AMR][1000 genomes]
rs9599464	0.94[EUR][1000 genomes]
rs9599466	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900479	chr13:69824819-69984297	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv900480	chr13:69891861-70027794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044321	chr13:69904665-69939510	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69929000-69929600	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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