Variant report

Variant	rs9529577
Chromosome Location	chr13:69994401-69994402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17609165	0.92[EUR][1000 genomes]
rs9317801	0.88[EUR][1000 genomes]
rs9317803	0.88[EUR][1000 genomes]
rs9317819	0.94[EUR][1000 genomes]
rs9529552	1.00[AMR][1000 genomes]
rs9529576	0.82[CEU][hapmap]
rs9529578	0.92[EUR][1000 genomes]
rs9529590	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541837	1.00[CEU][hapmap]
rs9541889	0.88[EUR][1000 genomes]
rs9541912	0.86[EUR][1000 genomes]
rs9541941	0.92[EUR][1000 genomes]
rs9541942	0.92[EUR][1000 genomes]
rs9541944	0.92[EUR][1000 genomes]
rs9541945	0.92[EUR][1000 genomes]
rs9541946	0.94[EUR][1000 genomes]
rs9541948	0.94[EUR][1000 genomes]
rs9599464	0.92[EUR][1000 genomes]
rs9599466	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900480	chr13:69891861-70027794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69994000-69995400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:69994000-69995400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:69994200-69997400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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