Variant report

Variant	rs9541948
Chromosome Location	chr13:70042589-70042590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17609165	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9317801	0.82[EUR][1000 genomes]
rs9317803	0.82[EUR][1000 genomes]
rs9317819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529576	1.00[CEU][hapmap]
rs9529577	0.94[EUR][1000 genomes]
rs9529578	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9529590	0.88[EUR][1000 genomes]
rs9541889	0.82[EUR][1000 genomes]
rs9541912	0.92[EUR][1000 genomes]
rs9541941	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541942	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599464	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9599466	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70041800-70044800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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