Variant report

Variant	rs9546602
Chromosome Location	chr13:84673014-84673015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56742355	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61318536	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66460106	1.00[EUR][1000 genomes]
rs67896489	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7324310	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9531553	0.95[EUR][1000 genomes]
rs9531555	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9531556	0.87[AMR][1000 genomes]
rs9546592	1.00[EUR][1000 genomes]
rs9546612	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546613	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546614	0.82[EUR][1000 genomes]
rs9546618	0.82[EUR][1000 genomes]
rs9546621	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050457	chr13:84540846-84676790	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84672200-84673200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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