Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs61318536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66460106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66697853	0.85[AMR][1000 genomes]
rs67213527	0.87[AMR][1000 genomes]
rs67896489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7324310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9531553	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9531555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9531556	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9531557	0.87[AMR][1000 genomes]
rs9531558	0.87[AMR][1000 genomes]
rs9546592	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546602	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546614	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546615	0.87[AMR][1000 genomes]
rs9546616	0.87[AMR][1000 genomes]
rs9546617	0.85[AMR][1000 genomes]
rs9546618	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050457	chr13:84540846-84676790	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562554	chr13:84547284-84662368	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv826732	chr13:84656285-84665033	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84660200-84661800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr13:84660200-84661800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr13:84660400-84661800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:84660600-84661800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:84660600-84662000	Active TSS	Pancreatic Islets	Pancreatic Islet

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