Variant report
| Variant | rs9531555 |
|---|---|
| Chromosome Location | chr13:84705999-84706000 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17077783 | 0.98[EUR][1000 genomes] |
| rs56742355 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs61318536 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs66460106 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs66697853 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs67213527 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs67896489 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7324310 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9531553 | 0.85[AMR][1000 genomes] |
| rs9531556 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9531557 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9531558 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9546592 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9546602 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9546612 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9546613 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9546614 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9546615 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9546616 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9546617 | 0.85[AMR][1000 genomes] |
| rs9546618 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9546621 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046982 | chr13:84631965-84800765 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1038880 | chr13:84632431-84861839 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035493 | chr13:84683545-84779862 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv900687 | chr13:84691001-84714655 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 6 | nsv562557 | chr13:84695884-84714655 | Weak transcription Enhancers Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 7 | nsv1044494 | chr13:84705200-84897141 | Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:84705600-84710200 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 2 | chr13:84705600-84711000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr13:84705600-84713000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
