Variant report

Variant	rs9546612
Chromosome Location	chr13:84711352-84711353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17077783	0.98[EUR][1000 genomes]
rs56742355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61318536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66460106	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66697853	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67213527	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67896489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7324310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9531553	0.85[AMR][1000 genomes]
rs9531555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9531556	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9531557	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9531558	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9546592	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546602	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9546613	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546614	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546615	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9546616	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9546617	0.85[AMR][1000 genomes]
rs9546618	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546621	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84705600-84713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84709800-84711600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr13:84710200-84711400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr13:84710400-84711400	Enhancers	Primary T cells from cord blood	blood
5	chr13:84710600-84711800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:84710800-84711400	Enhancers	Primary B cells from cord blood	blood
7	chr13:84710800-84711600	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:84710800-84711800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
9	chr13:84710800-84712000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:84710800-84712000	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr13:84710800-84712000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:84710800-84712200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:84711000-84711400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr13:84711000-84711400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr13:84711000-84711600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr13:84711000-84711600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr13:84711000-84711600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
18	chr13:84711000-84711600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr13:84711000-84711600	Flanking Active TSS	Dnd41	blood
20	chr13:84711000-84711800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:84711000-84711800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr13:84711200-84711400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr13:84711200-84711400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr13:84711200-84711400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:84711200-84711600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr13:84711200-84711800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr13:84711200-84712000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr13:84711200-84712000	Enhancers	NHEK	skin

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