Variant report

Variant	rs9546615
Chromosome Location	chr13:84714951-84714952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17077783	1.00[EUR][1000 genomes]
rs56742355	0.87[AMR][1000 genomes]
rs61318536	0.87[AMR][1000 genomes]
rs66697853	0.93[EUR][1000 genomes]
rs67213527	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67896489	0.87[AMR][1000 genomes]
rs7324310	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9531555	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9531556	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9531557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9531558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546612	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9546613	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9546614	0.98[EUR][1000 genomes]
rs9546616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9546618	0.98[EUR][1000 genomes]
rs9546621	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84711600-84716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:84712000-84715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:84712600-84715400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:84712800-84715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:84713000-84715600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:84713000-84715600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:84713200-84715000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:84713400-84715000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:84713600-84715000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:84713600-84715400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:84713600-84715400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:84713800-84715400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr13:84713800-84716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:84714200-84715400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:84714400-84715600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr13:84714600-84715200	Weak transcription	Dnd41	blood
17	chr13:84714600-84715400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr13:84714800-84715000	Enhancers	Fetal Brain Male	brain
19	chr13:84714800-84715000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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