Variant report

Variant	rs9576192
Chromosome Location	chr13:37729967-37729968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11147628	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1937758	0.85[AMR][1000 genomes]
rs3904094	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4943444	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57671308	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58229785	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7334447	0.85[AMR][1000 genomes]
rs9566181	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9566182	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9566187	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9576171	0.85[AMR][1000 genomes]
rs9576189	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9576190	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37722400-37740600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37729400-37730400	Active TSS	K562	blood
3	chr13:37729400-37730600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr13:37729400-37731000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr13:37729800-37730200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr13:37729800-37730200	Active TSS	Placenta	Placenta
7	chr13:37729800-37730600	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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