Variant report

Variant	rs9566187
Chromosome Location	chr13:37714435-37714436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009963	0.83[EUR][1000 genomes]
rs11147624	0.85[CHD][hapmap];0.86[JPT][hapmap]
rs11147625	0.85[CHD][hapmap];0.86[JPT][hapmap]
rs11147626	0.85[CHD][hapmap];0.86[JPT][hapmap]
rs11147627	0.85[CHD][hapmap];0.86[JPT][hapmap]
rs11147628	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11147629	0.86[EUR][1000 genomes]
rs11147630	0.86[EUR][1000 genomes]
rs11147632	0.86[EUR][1000 genomes]
rs11620134	0.86[EUR][1000 genomes]
rs1199995	0.82[EUR][1000 genomes]
rs1199996	0.82[EUR][1000 genomes]
rs12583685	0.86[EUR][1000 genomes]
rs12584417	0.86[EUR][1000 genomes]
rs12585998	0.86[EUR][1000 genomes]
rs1336754	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1336762	0.86[EUR][1000 genomes]
rs1764480	0.82[EUR][1000 genomes]
rs1781669	0.82[EUR][1000 genomes]
rs1781670	0.82[EUR][1000 genomes]
rs1856028	0.91[CEU][hapmap];0.92[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1856029	0.82[EUR][1000 genomes]
rs1937756	0.89[ASN][1000 genomes]
rs1937757	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1937758	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2078022	0.86[JPT][hapmap]
rs2243710	0.86[JPT][hapmap]
rs2997194	0.89[ASN][1000 genomes]
rs3818380	0.86[JPT][hapmap]
rs3904094	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4943438	0.86[JPT][hapmap]
rs4943439	0.86[JPT][hapmap]
rs4943440	0.86[JPT][hapmap]
rs4943444	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57671308	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58229785	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6563511	0.86[EUR][1000 genomes]
rs7327617	0.86[EUR][1000 genomes]
rs7334447	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7335490	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7981360	0.86[EUR][1000 genomes]
rs7996099	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7996290	0.89[ASN][1000 genomes]
rs7996605	0.86[EUR][1000 genomes]
rs7996662	0.86[EUR][1000 genomes]
rs8000946	0.86[JPT][hapmap]
rs8003010	0.82[EUR][1000 genomes]
rs945632	0.91[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs954370	0.86[JPT][hapmap]
rs9547711	0.86[JPT][hapmap]
rs9547713	0.86[JPT][hapmap]
rs9566176	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9566178	0.85[CHD][hapmap];0.84[JPT][hapmap]
rs9566181	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9566182	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9566183	0.86[EUR][1000 genomes]
rs9566184	0.86[EUR][1000 genomes]
rs9566185	0.86[EUR][1000 genomes]
rs9566186	0.86[EUR][1000 genomes]
rs9576151	0.86[JPT][hapmap]
rs9576167	0.85[JPT][hapmap]
rs9576171	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9576172	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576173	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576177	0.88[CHD][hapmap];0.86[JPT][hapmap]
rs9576184	0.85[EUR][1000 genomes]
rs9576185	0.85[EUR][1000 genomes]
rs9576186	0.86[EUR][1000 genomes]
rs9576187	0.86[EUR][1000 genomes]
rs9576188	0.86[EUR][1000 genomes]
rs9576189	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576190	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576192	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9603126	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37709200-37718200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:37710800-37718000	Weak transcription	NH-A	brain
3	chr13:37712600-37718200	Weak transcription	Hela-S3	cervix
4	chr13:37713800-37715400	Weak transcription	Osteobl	bone
5	chr13:37713800-37718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:37714000-37715200	Weak transcription	NHDF-Ad	bronchial
7	chr13:37714200-37715400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:37714200-37717600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr13:37714400-37715600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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