Variant report

Variant	rs9576173
Chromosome Location	chr13:37674566-37674567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1009963	0.85[EUR][1000 genomes]
rs11147624	1.00[ASW][hapmap];0.82[CHD][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs11147625	1.00[ASW][hapmap];0.82[CHD][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11147626	1.00[ASW][hapmap];0.82[CHD][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11147627	0.82[CHD][hapmap]
rs11147628	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11147629	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11147630	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11147632	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11620134	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1199995	0.87[EUR][1000 genomes]
rs1199996	0.87[EUR][1000 genomes]
rs12583685	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12584417	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12585998	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1336754	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336762	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1764480	0.87[EUR][1000 genomes]
rs1781669	0.87[EUR][1000 genomes]
rs1781670	0.87[EUR][1000 genomes]
rs1856028	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1856029	0.85[EUR][1000 genomes]
rs1937756	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1937757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1937758	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2997194	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852618	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs3852619	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs3852620	0.87[AFR][1000 genomes]
rs3864999	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs3904094	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3904095	0.87[AFR][1000 genomes]
rs3904755	0.87[AFR][1000 genomes]
rs3914300	0.83[AFR][1000 genomes]
rs4054546	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs4485226	0.88[AFR][1000 genomes]
rs4943444	0.83[EUR][1000 genomes]
rs57671308	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58229785	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6563510	0.87[AFR][1000 genomes]
rs6563511	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7327617	0.92[EUR][1000 genomes]
rs7334447	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7335490	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7981360	0.91[EUR][1000 genomes]
rs7996099	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7996290	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996605	0.91[EUR][1000 genomes]
rs7996662	0.91[EUR][1000 genomes]
rs8003010	0.87[EUR][1000 genomes]
rs945632	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566177	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs9566178	0.82[CHD][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs9566181	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9566182	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566183	0.91[EUR][1000 genomes]
rs9566184	0.91[EUR][1000 genomes]
rs9566185	0.91[EUR][1000 genomes]
rs9566186	0.91[EUR][1000 genomes]
rs9566187	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9576167	0.84[CEU][hapmap]
rs9576171	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576172	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576175	0.83[AFR][1000 genomes]
rs9576176	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs9576178	0.83[AFR][1000 genomes]
rs9576180	0.83[AFR][1000 genomes]
rs9576181	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs9576182	0.83[AFR][1000 genomes]
rs9576183	0.87[AFR][1000 genomes]
rs9576184	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9576185	0.90[EUR][1000 genomes]
rs9576186	0.91[EUR][1000 genomes]
rs9576187	0.91[EUR][1000 genomes]
rs9576188	0.91[EUR][1000 genomes]
rs9576189	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576190	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9603139	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9576173	ALG5	cis	parietal	SCAN
rs9576173	EXOSC8	cis	parietal	SCAN
rs9576173	N4BP2L2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37665400-37678400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:37673600-37677600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr13:37673600-37680800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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