Variant report

Variant	rs9576188
Chromosome Location	chr13:37692217-37692218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1009963	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11147624	0.84[CHB][hapmap]
rs11147625	0.84[CHB][hapmap]
rs11147626	0.84[CHB][hapmap]
rs11147627	0.84[CHB][hapmap]
rs11147628	0.91[EUR][1000 genomes]
rs11147629	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11147630	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11147632	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11620134	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1199995	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1199996	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12583685	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12584417	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12585998	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1336754	0.95[EUR][1000 genomes]
rs1336762	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1764480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1781669	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1781670	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1856028	0.84[CEU][hapmap];0.95[EUR][1000 genomes]
rs1856029	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1937756	0.88[EUR][1000 genomes]
rs1937757	0.93[EUR][1000 genomes]
rs1937758	0.87[EUR][1000 genomes]
rs2323396	0.85[CHB][hapmap]
rs2670061	0.81[ASN][1000 genomes]
rs2997194	0.89[EUR][1000 genomes]
rs3852618	0.85[CHB][hapmap]
rs3852619	0.81[CHB][hapmap]
rs3864999	0.85[CHB][hapmap]
rs3888918	0.82[ASN][1000 genomes]
rs3904094	0.90[EUR][1000 genomes]
rs4943444	0.88[EUR][1000 genomes]
rs57671308	0.90[EUR][1000 genomes]
rs58229785	0.91[EUR][1000 genomes]
rs6563511	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7327617	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7334447	0.87[EUR][1000 genomes]
rs7335490	0.95[EUR][1000 genomes]
rs7981360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7996099	0.91[EUR][1000 genomes]
rs7996290	0.86[EUR][1000 genomes]
rs7996605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7996662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003010	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs945632	0.84[CEU][hapmap];0.95[EUR][1000 genomes]
rs9566176	0.91[EUR][1000 genomes]
rs9566177	0.85[CHB][hapmap]
rs9566178	0.84[CHB][hapmap]
rs9566181	0.90[EUR][1000 genomes]
rs9566182	0.90[EUR][1000 genomes]
rs9566183	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9566184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9566185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9566186	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9566187	0.86[EUR][1000 genomes]
rs9576161	0.85[CEU][hapmap]
rs9576167	0.92[CEU][hapmap]
rs9576171	0.84[EUR][1000 genomes]
rs9576172	0.91[EUR][1000 genomes]
rs9576173	0.91[EUR][1000 genomes]
rs9576176	0.85[CHB][hapmap]
rs9576178	0.85[CHB][hapmap]
rs9576181	0.85[CHB][hapmap]
rs9576184	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9576185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9576186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9576187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9576189	0.91[EUR][1000 genomes]
rs9576190	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37683800-37701400	Weak transcription	Gastric	stomach
2	chr13:37685200-37692400	Weak transcription	Fetal Lung	lung
3	chr13:37691600-37693000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr13:37691600-37694200	Enhancers	Fetal Heart	heart
5	chr13:37691800-37693000	Enhancers	Rectal Smooth Muscle	rectum
6	chr13:37692000-37692400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
7	chr13:37692000-37692400	Enhancers	Brain Substantia Nigra	brain
8	chr13:37692000-37692600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:37692200-37692400	Enhancers	Psoas Muscle	Psoas
10	chr13:37692200-37692400	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr13:37692200-37692600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:37692200-37692600	Enhancers	Adipose Nuclei	Adipose
13	chr13:37692200-37692600	Enhancers	Fetal Muscle Leg	muscle
14	chr13:37692200-37692600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr13:37692200-37693000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr13:37692200-37693000	Enhancers	Left Ventricle	heart
17	chr13:37692200-37693200	Enhancers	Colon Smooth Muscle	Colon

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