Variant report

Variant	rs2670061
Chromosome Location	chr13:37685712-37685713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37685335..37685914-chr13:38176743..38177499,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1009963	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11147624	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147625	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147626	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11147627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147629	0.97[ASN][1000 genomes]
rs11147630	0.97[ASN][1000 genomes]
rs11147632	0.97[ASN][1000 genomes]
rs11620134	0.97[ASN][1000 genomes]
rs1199995	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1199996	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12583685	0.97[ASN][1000 genomes]
rs12584417	0.97[ASN][1000 genomes]
rs12585998	0.97[ASN][1000 genomes]
rs1336762	0.97[ASN][1000 genomes]
rs1764480	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1781669	0.98[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1781670	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1856028	0.82[CHD][hapmap]
rs1856029	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1937756	0.94[AFR][1000 genomes]
rs2078022	0.86[JPT][hapmap]
rs2243710	0.86[JPT][hapmap]
rs2323396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2997194	0.94[AFR][1000 genomes]
rs3818380	0.86[JPT][hapmap]
rs3852618	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852619	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852620	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3864999	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3888918	0.94[ASN][1000 genomes]
rs3904095	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3904755	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3914300	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4054546	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4485226	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4943438	0.86[JPT][hapmap]
rs4943439	0.86[JPT][hapmap]
rs4943440	0.86[JPT][hapmap]
rs4943445	0.93[CHD][hapmap]
rs6563510	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6563511	0.96[ASN][1000 genomes]
rs7327617	0.97[ASN][1000 genomes]
rs7981360	0.96[ASN][1000 genomes]
rs7996605	0.96[ASN][1000 genomes]
rs7996662	0.96[ASN][1000 genomes]
rs8000946	0.86[JPT][hapmap]
rs8002580	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003010	0.96[ASN][1000 genomes]
rs945632	0.82[CHD][hapmap]
rs954370	0.86[JPT][hapmap]
rs9547711	0.86[JPT][hapmap]
rs9547713	0.86[JPT][hapmap]
rs9566177	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566183	0.97[ASN][1000 genomes]
rs9566184	0.97[ASN][1000 genomes]
rs9566185	0.96[ASN][1000 genomes]
rs9566186	0.96[ASN][1000 genomes]
rs9576151	0.86[JPT][hapmap]
rs9576167	0.85[JPT][hapmap]
rs9576175	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576176	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576177	0.89[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576178	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576180	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576182	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576183	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576184	0.97[ASN][1000 genomes]
rs9576185	0.84[ASN][1000 genomes]
rs9576186	0.96[ASN][1000 genomes]
rs9576187	0.96[ASN][1000 genomes]
rs9576188	0.81[ASN][1000 genomes]
rs9603126	0.86[JPT][hapmap]
rs9603139	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2670061	N4BP2L2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37683800-37701400	Weak transcription	Gastric	stomach
2	chr13:37684000-37686800	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:37684200-37690200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:37685200-37692400	Weak transcription	Fetal Lung	lung

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