Variant report

Variant	rs8002580
Chromosome Location	chr13:37685279-37685280
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1009963	0.89[ASN][1000 genomes]
rs11147624	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11147625	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11147626	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11147629	0.94[ASN][1000 genomes]
rs11147630	0.94[ASN][1000 genomes]
rs11147632	0.94[ASN][1000 genomes]
rs11620134	0.94[ASN][1000 genomes]
rs1199995	0.93[ASN][1000 genomes]
rs1199996	0.93[ASN][1000 genomes]
rs12583685	0.94[ASN][1000 genomes]
rs12584417	0.94[ASN][1000 genomes]
rs12585998	0.94[ASN][1000 genomes]
rs1336762	0.94[ASN][1000 genomes]
rs1764480	0.91[ASN][1000 genomes]
rs1781669	0.94[ASN][1000 genomes]
rs1781670	0.94[ASN][1000 genomes]
rs1856029	0.92[ASN][1000 genomes]
rs2078022	0.85[JPT][hapmap]
rs2243710	0.85[JPT][hapmap]
rs2323396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2670061	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818380	0.85[JPT][hapmap]
rs3852618	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852619	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852620	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3864999	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3888918	0.92[ASN][1000 genomes]
rs3904095	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3904755	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914300	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4054546	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4485226	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4943440	0.85[JPT][hapmap]
rs6563510	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6563511	0.93[ASN][1000 genomes]
rs7327617	0.94[ASN][1000 genomes]
rs7981360	0.93[ASN][1000 genomes]
rs7996290	0.92[AFR][1000 genomes]
rs7996605	0.93[ASN][1000 genomes]
rs7996662	0.93[ASN][1000 genomes]
rs8000946	0.85[JPT][hapmap]
rs8003010	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs954370	0.85[JPT][hapmap]
rs9547711	0.85[JPT][hapmap]
rs9547713	0.85[JPT][hapmap]
rs9566177	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566178	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566183	0.94[ASN][1000 genomes]
rs9566184	0.94[ASN][1000 genomes]
rs9566185	0.93[ASN][1000 genomes]
rs9566186	0.93[ASN][1000 genomes]
rs9576151	0.85[JPT][hapmap]
rs9576167	0.84[JPT][hapmap]
rs9576175	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576176	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576177	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576180	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576181	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576182	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576183	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576184	0.94[ASN][1000 genomes]
rs9576185	0.82[ASN][1000 genomes]
rs9576186	0.93[ASN][1000 genomes]
rs9576187	0.93[ASN][1000 genomes]
rs9603126	0.85[JPT][hapmap]
rs9603139	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37683800-37701400	Weak transcription	Gastric	stomach
2	chr13:37684000-37686800	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:37684200-37690200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:37685200-37692400	Weak transcription	Fetal Lung	lung

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