Variant report

Variant	rs1856029
Chromosome Location	chr13:37723302-37723303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1009963	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11147624	0.92[ASN][1000 genomes]
rs11147625	0.92[ASN][1000 genomes]
rs11147626	0.90[ASN][1000 genomes]
rs11147627	0.92[ASN][1000 genomes]
rs11147628	0.84[EUR][1000 genomes]
rs11147629	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11147630	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11147632	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11620134	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1199995	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1199996	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12583685	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12584417	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12585998	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1336754	0.88[EUR][1000 genomes]
rs1336762	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1764480	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1781669	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1781670	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1856028	0.88[EUR][1000 genomes]
rs1937756	0.91[EUR][1000 genomes]
rs1937757	0.86[EUR][1000 genomes]
rs1937758	0.81[EUR][1000 genomes]
rs2323396	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2670061	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2997194	0.92[EUR][1000 genomes]
rs3852618	0.92[ASN][1000 genomes]
rs3852619	0.92[ASN][1000 genomes]
rs3852620	0.92[ASN][1000 genomes]
rs3864999	0.91[ASN][1000 genomes]
rs3888918	1.00[ASN][1000 genomes]
rs3904094	0.84[EUR][1000 genomes]
rs3904095	0.91[ASN][1000 genomes]
rs3904755	0.92[ASN][1000 genomes]
rs3914300	0.92[ASN][1000 genomes]
rs4054546	0.92[ASN][1000 genomes]
rs4485226	0.92[ASN][1000 genomes]
rs4943444	0.85[EUR][1000 genomes]
rs57671308	0.87[EUR][1000 genomes]
rs58229785	0.85[EUR][1000 genomes]
rs6563510	0.89[ASN][1000 genomes]
rs6563511	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327617	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7334447	0.81[EUR][1000 genomes]
rs7335490	0.88[EUR][1000 genomes]
rs7981360	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7996099	0.85[EUR][1000 genomes]
rs7996290	0.89[EUR][1000 genomes]
rs7996605	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7996662	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8002580	0.92[ASN][1000 genomes]
rs8003010	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs945632	0.88[EUR][1000 genomes]
rs9566176	0.84[EUR][1000 genomes]
rs9566177	0.92[ASN][1000 genomes]
rs9566178	0.92[ASN][1000 genomes]
rs9566181	0.83[EUR][1000 genomes]
rs9566182	0.84[EUR][1000 genomes]
rs9566183	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566184	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566185	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9566186	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9566187	0.82[EUR][1000 genomes]
rs9576172	0.85[EUR][1000 genomes]
rs9576173	0.85[EUR][1000 genomes]
rs9576175	0.92[ASN][1000 genomes]
rs9576176	0.92[ASN][1000 genomes]
rs9576177	0.91[ASN][1000 genomes]
rs9576178	0.92[ASN][1000 genomes]
rs9576180	0.90[ASN][1000 genomes]
rs9576181	0.92[ASN][1000 genomes]
rs9576182	0.92[ASN][1000 genomes]
rs9576183	0.92[ASN][1000 genomes]
rs9576184	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576185	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9576186	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576187	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576188	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9576189	0.85[EUR][1000 genomes]
rs9576190	0.86[EUR][1000 genomes]
rs9603139	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37722400-37723800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37722400-37740600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:37723000-37723800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links