Variant report

Variant	rs57671308
Chromosome Location	chr13:37720055-37720056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXOSC8-4	chr13:37717080-37721033	NONHSAT033243
2	lnc-CSNK1A1L-1	chr13:37717104-37720855	NONHSAT033244

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1009963	0.84[EUR][1000 genomes]
rs11147628	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11147629	0.89[EUR][1000 genomes]
rs11147630	0.89[EUR][1000 genomes]
rs11147632	0.89[EUR][1000 genomes]
rs11620134	0.89[EUR][1000 genomes]
rs1199995	0.85[EUR][1000 genomes]
rs1199996	0.85[EUR][1000 genomes]
rs12583685	0.89[EUR][1000 genomes]
rs12584417	0.89[EUR][1000 genomes]
rs12585998	0.89[EUR][1000 genomes]
rs1336754	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1336762	0.89[EUR][1000 genomes]
rs1764480	0.85[EUR][1000 genomes]
rs1781669	0.85[EUR][1000 genomes]
rs1781670	0.85[EUR][1000 genomes]
rs1856028	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1856029	0.87[EUR][1000 genomes]
rs1937756	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1937757	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1937758	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2997194	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3904094	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4519211	0.81[AMR][1000 genomes]
rs4943444	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58229785	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6563511	0.90[EUR][1000 genomes]
rs7327617	0.89[EUR][1000 genomes]
rs7334447	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7335490	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7981360	0.90[EUR][1000 genomes]
rs7996099	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7996290	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7996605	0.90[EUR][1000 genomes]
rs7996662	0.90[EUR][1000 genomes]
rs8003010	0.85[EUR][1000 genomes]
rs945632	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9566176	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9566181	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9566182	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9566183	0.89[EUR][1000 genomes]
rs9566184	0.90[EUR][1000 genomes]
rs9566185	0.90[EUR][1000 genomes]
rs9566186	0.90[EUR][1000 genomes]
rs9566187	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576171	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576172	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9576173	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9576184	0.88[EUR][1000 genomes]
rs9576185	0.88[EUR][1000 genomes]
rs9576186	0.90[EUR][1000 genomes]
rs9576187	0.90[EUR][1000 genomes]
rs9576188	0.90[EUR][1000 genomes]
rs9576189	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576190	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576192	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37717400-37720200	Enhancers	Fetal Lung	lung
2	chr13:37717600-37722400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:37718600-37722600	Weak transcription	Hela-S3	cervix
4	chr13:37719200-37722600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:37719600-37723000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:37719800-37722400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:37719800-37722600	Weak transcription	Osteobl	bone

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