Variant report

Variant	rs9566186
Chromosome Location	chr13:37693355-37693356
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37689497..37691562-chr13:37693023..37694916,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1009963	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11147624	0.93[ASN][1000 genomes]
rs11147625	0.93[ASN][1000 genomes]
rs11147626	0.91[ASN][1000 genomes]
rs11147627	0.93[ASN][1000 genomes]
rs11147628	0.91[EUR][1000 genomes]
rs11147629	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11147630	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11147632	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11620134	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1199995	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199996	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12583685	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12584417	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12585998	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336754	0.95[EUR][1000 genomes]
rs1336762	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1764480	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1781669	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1781670	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1856028	0.95[EUR][1000 genomes]
rs1856029	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1937756	0.88[EUR][1000 genomes]
rs1937757	0.93[EUR][1000 genomes]
rs1937758	0.87[EUR][1000 genomes]
rs2323396	0.93[ASN][1000 genomes]
rs2670061	0.96[ASN][1000 genomes]
rs2997194	0.89[EUR][1000 genomes]
rs3852618	0.93[ASN][1000 genomes]
rs3852619	0.93[ASN][1000 genomes]
rs3852620	0.93[ASN][1000 genomes]
rs3864999	0.92[ASN][1000 genomes]
rs3888918	0.97[ASN][1000 genomes]
rs3904094	0.90[EUR][1000 genomes]
rs3904095	0.92[ASN][1000 genomes]
rs3904755	0.93[ASN][1000 genomes]
rs3914300	0.93[ASN][1000 genomes]
rs4054546	0.93[ASN][1000 genomes]
rs4485226	0.93[ASN][1000 genomes]
rs4943444	0.88[EUR][1000 genomes]
rs57671308	0.90[EUR][1000 genomes]
rs58229785	0.91[EUR][1000 genomes]
rs6563510	0.90[ASN][1000 genomes]
rs6563511	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327617	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7334447	0.87[EUR][1000 genomes]
rs7335490	0.95[EUR][1000 genomes]
rs7981360	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996099	0.91[EUR][1000 genomes]
rs7996290	0.86[EUR][1000 genomes]
rs7996605	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7996662	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002580	0.93[ASN][1000 genomes]
rs8003010	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945632	0.95[EUR][1000 genomes]
rs9566176	0.91[EUR][1000 genomes]
rs9566177	0.93[ASN][1000 genomes]
rs9566178	0.93[ASN][1000 genomes]
rs9566181	0.90[EUR][1000 genomes]
rs9566182	0.90[EUR][1000 genomes]
rs9566183	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566184	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9566185	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566187	0.86[EUR][1000 genomes]
rs9576171	0.84[EUR][1000 genomes]
rs9576172	0.91[EUR][1000 genomes]
rs9576173	0.91[EUR][1000 genomes]
rs9576175	0.93[ASN][1000 genomes]
rs9576176	0.93[ASN][1000 genomes]
rs9576177	0.92[ASN][1000 genomes]
rs9576178	0.93[ASN][1000 genomes]
rs9576180	0.91[ASN][1000 genomes]
rs9576181	0.93[ASN][1000 genomes]
rs9576182	0.93[ASN][1000 genomes]
rs9576183	0.93[ASN][1000 genomes]
rs9576184	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576185	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9576186	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576187	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576188	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9576189	0.91[EUR][1000 genomes]
rs9576190	0.90[EUR][1000 genomes]
rs9603139	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37683800-37701400	Weak transcription	Gastric	stomach
2	chr13:37691600-37694200	Enhancers	Fetal Heart	heart
3	chr13:37692400-37695800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:37693000-37695200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links