Variant report

Variant	rs9576180
Chromosome Location	chr13:37680305-37680306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1009963	0.86[ASN][1000 genomes]
rs11147624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147626	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11147627	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11147629	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11147630	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11147632	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11620134	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1199995	0.91[ASN][1000 genomes]
rs1199996	0.91[ASN][1000 genomes]
rs12583685	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12584417	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12585998	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1336754	0.97[AFR][1000 genomes]
rs1336762	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1764480	0.89[ASN][1000 genomes]
rs1781669	0.92[ASN][1000 genomes]
rs1781670	0.92[ASN][1000 genomes]
rs1856028	0.97[AFR][1000 genomes]
rs1856029	0.90[ASN][1000 genomes]
rs1937757	0.87[AFR][1000 genomes]
rs2323396	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2670061	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3852618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3864999	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3888918	0.90[ASN][1000 genomes]
rs3904095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3904755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3914300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4054546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4485226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6563510	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6563511	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7327617	0.92[ASN][1000 genomes]
rs7335490	0.93[AFR][1000 genomes]
rs7981360	0.91[ASN][1000 genomes]
rs7996099	0.88[AFR][1000 genomes]
rs7996605	0.91[ASN][1000 genomes]
rs7996662	0.91[ASN][1000 genomes]
rs8002580	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003010	0.91[ASN][1000 genomes]
rs945632	0.90[AFR][1000 genomes]
rs9566176	0.82[AFR][1000 genomes]
rs9566177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9566183	0.92[ASN][1000 genomes]
rs9566184	0.92[ASN][1000 genomes]
rs9566185	0.91[ASN][1000 genomes]
rs9566186	0.91[ASN][1000 genomes]
rs9576172	0.82[AFR][1000 genomes]
rs9576173	0.83[AFR][1000 genomes]
rs9576175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576177	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576183	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576184	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9576185	0.80[ASN][1000 genomes]
rs9576186	0.91[ASN][1000 genomes]
rs9576187	0.91[ASN][1000 genomes]
rs9603139	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv12579	chr13:37679949-37681397	Enhancers Weak transcription Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37673600-37680800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:37677000-37680400	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:37677200-37680400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:37677200-37680400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:37677400-37680600	Weak transcription	HSMMtube	muscle
6	chr13:37677800-37682200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr13:37678600-37680400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:37679800-37681800	Weak transcription	Spleen	Spleen
9	chr13:37679800-37682800	Weak transcription	Fetal Stomach	stomach
10	chr13:37680200-37681600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:37680200-37682000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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