Variant report

Variant	rs58229785
Chromosome Location	chr13:37705220-37705221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37703579..37706141-chr13:37717526..37719310,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1009963	0.85[EUR][1000 genomes]
rs11147628	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11147629	0.91[EUR][1000 genomes]
rs11147630	0.91[EUR][1000 genomes]
rs11147632	0.91[EUR][1000 genomes]
rs11620134	0.91[EUR][1000 genomes]
rs1199995	0.87[EUR][1000 genomes]
rs1199996	0.87[EUR][1000 genomes]
rs12583685	0.91[EUR][1000 genomes]
rs12584417	0.91[EUR][1000 genomes]
rs12585998	0.91[EUR][1000 genomes]
rs1336754	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1336762	0.91[EUR][1000 genomes]
rs1764480	0.86[EUR][1000 genomes]
rs1781669	0.86[EUR][1000 genomes]
rs1781670	0.86[EUR][1000 genomes]
rs1856028	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1856029	0.85[EUR][1000 genomes]
rs1937756	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1937757	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1937758	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2997194	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3904094	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4943444	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57671308	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6563511	0.91[EUR][1000 genomes]
rs7327617	0.91[EUR][1000 genomes]
rs7334447	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335490	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7981360	0.91[EUR][1000 genomes]
rs7996099	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7996290	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7996605	0.91[EUR][1000 genomes]
rs7996662	0.91[EUR][1000 genomes]
rs8003010	0.87[EUR][1000 genomes]
rs945632	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566176	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9566181	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566182	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9566183	0.91[EUR][1000 genomes]
rs9566184	0.91[EUR][1000 genomes]
rs9566185	0.91[EUR][1000 genomes]
rs9566186	0.91[EUR][1000 genomes]
rs9566187	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9576171	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9576172	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576173	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576184	0.90[EUR][1000 genomes]
rs9576185	0.89[EUR][1000 genomes]
rs9576186	0.91[EUR][1000 genomes]
rs9576187	0.91[EUR][1000 genomes]
rs9576188	0.91[EUR][1000 genomes]
rs9576189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9576190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576192	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37701000-37707200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37701800-37709200	Weak transcription	Fetal Kidney	kidney
3	chr13:37702200-37707600	Weak transcription	Hela-S3	cervix
4	chr13:37702400-37708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:37702800-37707800	Weak transcription	NH-A	brain
6	chr13:37702800-37708000	Weak transcription	Osteobl	bone
7	chr13:37703600-37708400	Weak transcription	Fetal Lung	lung
8	chr13:37703800-37705400	Enhancers	Colon Smooth Muscle	Colon
9	chr13:37704400-37708600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:37704800-37708600	Enhancers	HUVEC	blood vessel
11	chr13:37705200-37705400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:37705200-37708400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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