Variant report

Variant	rs9583432
Chromosome Location	chr13:110522316-110522317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110516111..110518127-chr13:110519697..110522544,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12584109	0.81[EUR][1000 genomes]
rs336224	0.84[EUR][1000 genomes]
rs336225	0.84[EUR][1000 genomes]
rs444033	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59174973	0.81[EUR][1000 genomes]
rs73610814	0.81[EUR][1000 genomes]
rs73610880	0.81[EUR][1000 genomes]
rs73610891	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:110521000-110523000	Enhancers	Spleen	Spleen
3	chr13:110521200-110522400	Active TSS	Fetal Lung	lung
4	chr13:110521200-110522600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr13:110521400-110522400	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr13:110521400-110523600	Enhancers	Fetal Heart	heart
7	chr13:110521600-110522400	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr13:110521600-110522400	Active TSS	Fetal Brain Female	brain
9	chr13:110521600-110522400	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr13:110521600-110522600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:110521600-110522600	Active TSS	Brain Hippocampus Middle	brain
12	chr13:110521600-110522600	Flanking Active TSS	Fetal Intestine Large	intestine
13	chr13:110521600-110522600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr13:110521600-110522800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110521600-110522800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr13:110521600-110522800	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr13:110521600-110522800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr13:110521600-110523000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:110521600-110523000	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr13:110521600-110523200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:110521800-110522400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr13:110521800-110522400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:110521800-110522400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr13:110521800-110522400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:110521800-110522400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:110521800-110522400	Active TSS	Aorta	Aorta
27	chr13:110521800-110522400	Active TSS	Colonic Mucosa	Colon
28	chr13:110521800-110522400	Flanking Active TSS	Esophagus	oesophagus
29	chr13:110521800-110522400	Active TSS	Fetal Kidney	kidney
30	chr13:110521800-110522400	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr13:110521800-110522400	Active TSS	Ovary	ovary
32	chr13:110521800-110522400	Active TSS	Pancreas	Pancrea
33	chr13:110521800-110522400	Active TSS	Psoas Muscle	Psoas
34	chr13:110521800-110522400	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr13:110521800-110522600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:110521800-110522600	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr13:110521800-110522600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
38	chr13:110521800-110522600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:110521800-110522600	Active TSS	Liver	Liver
40	chr13:110521800-110522600	Active TSS	Brain Angular Gyrus	brain
41	chr13:110521800-110522600	Active TSS	Brain Anterior Caudate	brain
42	chr13:110521800-110522600	Active TSS	Brain Cingulate Gyrus	brain
43	chr13:110521800-110522600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr13:110521800-110522600	Flanking Active TSS	Placenta	Placenta
45	chr13:110521800-110522600	Active TSS	Rectal Smooth Muscle	rectum
46	chr13:110521800-110522600	Active TSS	HSMMtube	muscle
47	chr13:110521800-110522600	Active TSS	Osteobl	bone
48	chr13:110521800-110522800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:110521800-110522800	Flanking Active TSS	NHLF	lung
50	chr13:110522000-110522400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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