Variant report

Variant	rs444033
Chromosome Location	chr13:110521320-110521321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110516111..110518127-chr13:110519697..110522544,3	MCF-7	breast:
2	chr13:110521072..110521899-chr13:110651072..110651611,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12584109	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12586001	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs336222	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs336224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs336225	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs336234	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57965758	0.85[EUR][1000 genomes]
rs58769110	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59174973	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60260995	0.85[EUR][1000 genomes]
rs60407269	0.85[EUR][1000 genomes]
rs60666848	0.85[EUR][1000 genomes]
rs7333538	0.85[EUR][1000 genomes]
rs73610814	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73610880	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73610891	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7998532	0.85[EUR][1000 genomes]
rs7999530	0.85[EUR][1000 genomes]
rs9559669	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9583432	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9587993	0.85[EUR][1000 genomes]
rs9587995	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110516000-110521600	Weak transcription	NHEK	skin
2	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:110519000-110521800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:110520000-110521600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr13:110520200-110521400	Enhancers	A549	lung
6	chr13:110520200-110521600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:110520200-110521600	Enhancers	Rectal Smooth Muscle	rectum
8	chr13:110520200-110521800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:110520200-110521800	Enhancers	Small Intestine	intestine
10	chr13:110520200-110522200	Enhancers	Hela-S3	cervix
11	chr13:110520400-110521400	Enhancers	Duodenum Mucosa	Duodenum
12	chr13:110520600-110521800	Enhancers	Liver	Liver
13	chr13:110520800-110521600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:110520800-110521600	Enhancers	Fetal Intestine Small	intestine
15	chr13:110520800-110521800	Enhancers	Placenta	Placenta
16	chr13:110521000-110521400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:110521000-110521600	Enhancers	Adipose Nuclei	Adipose
18	chr13:110521000-110521600	Weak transcription	Brain Germinal Matrix	brain
19	chr13:110521000-110521600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr13:110521000-110521800	Enhancers	Esophagus	oesophagus
21	chr13:110521000-110522000	Enhancers	Dnd41	blood
22	chr13:110521000-110523000	Enhancers	Spleen	Spleen
23	chr13:110521200-110521600	Enhancers	Fetal Intestine Large	intestine
24	chr13:110521200-110521600	Enhancers	Fetal Stomach	stomach
25	chr13:110521200-110521600	Enhancers	Stomach Smooth Muscle	stomach
26	chr13:110521200-110521800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:110521200-110521800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr13:110521200-110521800	Weak transcription	Pancreas	Pancrea
29	chr13:110521200-110521800	Weak transcription	HSMMtube	muscle
30	chr13:110521200-110522000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:110521200-110522000	Enhancers	HSMM	muscle
32	chr13:110521200-110522200	Weak transcription	Lung	lung
33	chr13:110521200-110522400	Active TSS	Fetal Lung	lung
34	chr13:110521200-110522600	Enhancers	Sigmoid Colon	Sigmoid Colon

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