Variant report

Variant	rs336222
Chromosome Location	chr13:110516933-110516934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12584109	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12586001	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs336223	0.91[AFR][1000 genomes]
rs336224	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336225	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs336234	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs444033	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58769110	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59174973	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73610814	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73610880	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73610891	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9559669	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110515600-110519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:110515600-110521000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:110515600-110521200	Weak transcription	HSMM	muscle
4	chr13:110515800-110520200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:110515800-110520200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:110515800-110520800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:110515800-110521000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:110515800-110521200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:110516000-110521600	Weak transcription	NHEK	skin
10	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:110516200-110520800	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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