Variant report

Variant	rs12586001
Chromosome Location	chr13:110498758-110498759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10454514	0.87[EUR][1000 genomes]
rs10454541	0.87[EUR][1000 genomes]
rs10454542	0.87[EUR][1000 genomes]
rs12016861	0.83[EUR][1000 genomes]
rs12583717	0.87[EUR][1000 genomes]
rs12584109	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs168057	0.87[EUR][1000 genomes]
rs336222	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs336224	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs336225	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs336234	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs444033	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57965758	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58769110	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59174973	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60260995	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60407269	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60666848	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7333538	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7338690	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73608761	0.87[EUR][1000 genomes]
rs73608768	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73610814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73610880	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73610891	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7994334	0.87[EUR][1000 genomes]
rs7998532	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7999530	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9559669	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9587993	0.96[EUR][1000 genomes]
rs9587995	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976222	chr13:110495093-110499364	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110493200-110499200	Weak transcription	Right Atrium	heart
2	chr13:110498600-110498800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110498600-110498800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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