Variant report

Variant	rs7994334
Chromosome Location	chr13:110472407-110472408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110435545..110437326-chr13:110470827..110473616,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10454514	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10454541	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10454542	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12016861	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12583717	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584109	0.80[EUR][1000 genomes]
rs12584954	0.81[ASN][1000 genomes]
rs12585507	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12586001	0.87[EUR][1000 genomes]
rs1335611	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs168057	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs336234	0.87[EUR][1000 genomes]
rs3803239	0.86[ASN][1000 genomes]
rs57965758	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58769110	0.87[EUR][1000 genomes]
rs59174973	0.80[EUR][1000 genomes]
rs60260995	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60407269	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60666848	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60710406	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7333538	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338690	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73608761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73608768	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73608769	0.95[AFR][1000 genomes]
rs73610814	0.80[EUR][1000 genomes]
rs73610880	0.80[EUR][1000 genomes]
rs73610891	0.80[EUR][1000 genomes]
rs7998532	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999530	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9587991	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9587992	0.91[AFR][1000 genomes]
rs9587993	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9587995	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110470000-110473000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:110470200-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110471000-110472800	Weak transcription	Pancreas	Pancrea
4	chr13:110471200-110473400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr13:110471200-110473400	Weak transcription	Esophagus	oesophagus
6	chr13:110471200-110476200	Weak transcription	HSMM	muscle
7	chr13:110471400-110473600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:110472000-110473400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:110472200-110472800	Enhancers	Fetal Kidney	kidney
10	chr13:110472200-110474000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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