Variant report

Variant	rs168057
Chromosome Location	chr13:110496726-110496727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10454514	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10454541	0.81[EUR][1000 genomes]
rs10454542	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12016861	0.88[ASN][1000 genomes]
rs12583717	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12584109	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12585507	1.00[JPT][hapmap]
rs12586001	0.87[EUR][1000 genomes]
rs1335611	0.88[ASN][1000 genomes]
rs336234	0.87[EUR][1000 genomes]
rs57965758	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58769110	0.87[EUR][1000 genomes]
rs59174973	0.80[EUR][1000 genomes]
rs60260995	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60407269	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60666848	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60710406	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7333538	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7338690	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73608761	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73608768	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73610814	0.80[EUR][1000 genomes]
rs73610880	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73610891	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7994334	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7998532	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7999530	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9587991	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9587993	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9587995	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976222	chr13:110495093-110499364	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110489600-110497200	Weak transcription	Stomach Mucosa	stomach
2	chr13:110493000-110497800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:110493200-110498600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110493200-110499200	Weak transcription	Right Atrium	heart
5	chr13:110493800-110496800	Weak transcription	HMEC	breast
6	chr13:110493800-110497000	Weak transcription	NH-A	brain
7	chr13:110494000-110497000	Weak transcription	HSMMtube	muscle
8	chr13:110495800-110497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:110496000-110497600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:110496200-110497600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:110496200-110497600	Enhancers	Rectal Smooth Muscle	rectum
12	chr13:110496600-110496800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:110496600-110497000	Active TSS	Colon Smooth Muscle	Colon
14	chr13:110496600-110497000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr13:110496600-110497200	Enhancers	Osteobl	bone
16	chr13:110496600-110497400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:110496600-110497400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:110496600-110497400	Enhancers	Fetal Heart	heart
19	chr13:110496600-110497400	Active TSS	Stomach Smooth Muscle	stomach
20	chr13:110496600-110497600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:110496600-110497600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr13:110496600-110497600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:110496600-110497600	Enhancers	HSMM	muscle

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