Variant report

Variant	rs9584214
Chromosome Location	chr13:94977567-94977568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1409172	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17175238	0.85[CHB][hapmap]
rs17175245	0.85[CHB][hapmap]
rs17253794	0.85[CHB][hapmap]
rs7324370	0.85[CHB][hapmap]
rs7327943	0.81[ASW][hapmap];0.85[CHB][hapmap];0.84[LWK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs7328131	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs7331502	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs7335845	0.82[AFR][1000 genomes]
rs7336410	0.85[CHB][hapmap];0.84[LWK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs9301952	0.84[AMR][1000 genomes]
rs9516387	0.85[CHB][hapmap]
rs9524432	0.85[CHB][hapmap]
rs9524435	0.85[CHB][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs9524436	0.84[AFR][1000 genomes]
rs9524438	0.85[CHB][hapmap]
rs9524449	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9584214	DCT	cis	cerebellum	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
2	chr13:94965800-94979600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr13:94969400-94979400	Weak transcription	Fetal Stomach	stomach
4	chr13:94969800-94978000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:94969800-94978400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:94969800-94979200	Weak transcription	Fetal Lung	lung
7	chr13:94969800-94981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:94971200-94979400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:94971400-94979400	Weak transcription	HSMM	muscle
10	chr13:94973000-94982200	Weak transcription	Pancreas	Pancrea
11	chr13:94974400-94979600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr13:94974600-94982000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:94975000-94978200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr13:94975000-94979200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr13:94975000-94979400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr13:94975000-94979400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr13:94975000-94979600	Enhancers	Primary B cells from peripheral blood	blood
18	chr13:94975000-94979600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr13:94975000-94980600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:94975000-94980800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:94975000-94980800	Enhancers	Thymus	Thymus
22	chr13:94975000-94981800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr13:94975200-94977600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr13:94975200-94978000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:94975400-94978800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:94975400-94979600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr13:94975600-94977600	Enhancers	Primary B cells from cord blood	blood
28	chr13:94975600-94981000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr13:94976000-94983200	Enhancers	HSMMtube	muscle
30	chr13:94976200-94977800	Enhancers	Fetal Heart	heart
31	chr13:94976200-94979400	Weak transcription	Placenta	Placenta
32	chr13:94976200-94983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr13:94976400-94979400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr13:94976600-94977600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr13:94976600-94979600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr13:94976600-94979600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr13:94976600-94981200	Enhancers	Fetal Thymus	thymus
38	chr13:94976600-94984000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr13:94976800-94978200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:94976800-94978400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:94976800-94979200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr13:94976800-94979400	Enhancers	Primary T cells from cord blood	blood
43	chr13:94977000-94978200	Enhancers	NHDF-Ad	bronchial
44	chr13:94977000-94978400	Enhancers	NHLF	lung
45	chr13:94977000-94979200	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr13:94977000-94979400	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr13:94977000-94981600	Enhancers	Ovary	ovary
48	chr13:94977200-94977800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr13:94977200-94978200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:94977200-94978400	Enhancers	Adipose Nuclei	Adipose

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