Variant report

Variant	rs9516387
Chromosome Location	chr13:94967677-94967678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11839525	1.00[CEU][hapmap]
rs17175238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335845	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516383	1.00[CEU][hapmap]
rs9516385	1.00[AMR][1000 genomes]
rs9516390	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524403	1.00[CEU][hapmap]
rs9524413	1.00[CEU][hapmap]
rs9524419	1.00[CEU][hapmap]
rs9524420	1.00[CEU][hapmap]
rs9524425	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524436	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584214	0.85[CHB][hapmap]
rs9645929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958400-94969200	Weak transcription	Liver	Liver
2	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
3	chr13:94961000-94967800	Enhancers	NHDF-Ad	bronchial
4	chr13:94961200-94969200	Weak transcription	Psoas Muscle	Psoas
5	chr13:94963000-94969200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:94963200-94969000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:94964000-94973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:94964200-94969000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:94964800-94969000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr13:94964800-94969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:94964800-94969000	Weak transcription	NHLF	lung
12	chr13:94964800-94969200	Weak transcription	HSMM	muscle
13	chr13:94965000-94969200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr13:94965200-94969000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr13:94965400-94969000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:94965400-94969000	Weak transcription	Fetal Thymus	thymus
17	chr13:94965400-94977400	Weak transcription	Fetal Kidney	kidney
18	chr13:94965600-94969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr13:94965600-94969200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr13:94965800-94969000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr13:94965800-94969000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:94965800-94969000	Weak transcription	Brain Germinal Matrix	brain
23	chr13:94965800-94969000	Weak transcription	NH-A	brain
24	chr13:94965800-94969200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:94965800-94969400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr13:94965800-94969800	Weak transcription	HSMMtube	muscle
27	chr13:94965800-94979600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr13:94966000-94969000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr13:94966000-94969000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:94966000-94969000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr13:94966000-94969200	Weak transcription	Brain Anterior Caudate	brain
32	chr13:94966200-94969000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:94966200-94969000	Weak transcription	Osteobl	bone
34	chr13:94966200-94969200	Weak transcription	GM12878-XiMat	blood
35	chr13:94966200-94977200	Weak transcription	Adipose Nuclei	Adipose
36	chr13:94966400-94969000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:94966400-94969000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:94966800-94969000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr13:94966800-94969000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:94966800-94969200	Weak transcription	Fetal Stomach	stomach
41	chr13:94967400-94969400	Weak transcription	Fetal Lung	lung
42	chr13:94967600-94968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr13:94967600-94969000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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