Variant report

Variant	rs9645929
Chromosome Location	chr13:94964920-94964921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11839525	1.00[CEU][hapmap]
rs17175238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7335845	1.00[ASN][1000 genomes]
rs7336410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs9516383	1.00[CEU][hapmap]
rs9516385	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516390	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524403	1.00[CEU][hapmap]
rs9524413	1.00[CEU][hapmap]
rs9524419	1.00[CEU][hapmap]
rs9524420	1.00[CEU][hapmap]
rs9524425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524434	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9524436	1.00[ASN][1000 genomes]
rs9524438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958400-94969200	Weak transcription	Liver	Liver
2	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
3	chr13:94961000-94967800	Enhancers	NHDF-Ad	bronchial
4	chr13:94961200-94969200	Weak transcription	Psoas Muscle	Psoas
5	chr13:94961800-94965800	Enhancers	HUVEC	blood vessel
6	chr13:94962000-94965000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr13:94962200-94965000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:94963000-94969200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:94963200-94965800	Enhancers	NH-A	brain
10	chr13:94963200-94966200	Enhancers	Osteobl	bone
11	chr13:94963200-94966400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:94963200-94966800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:94963200-94969000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:94963400-94965400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:94963600-94965200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr13:94963800-94965400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:94964000-94965400	Enhancers	Fetal Kidney	kidney
18	chr13:94964000-94965400	Enhancers	Fetal Lung	lung
19	chr13:94964000-94965400	Enhancers	Fetal Thymus	thymus
20	chr13:94964000-94965600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:94964000-94966000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr13:94964000-94966000	Enhancers	Fetal Heart	heart
23	chr13:94964000-94966000	Enhancers	Fetal Muscle Leg	muscle
24	chr13:94964000-94966200	Enhancers	Fetal Stomach	stomach
25	chr13:94964000-94973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:94964200-94965000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr13:94964200-94965000	Weak transcription	Pancreas	Pancrea
28	chr13:94964200-94965200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:94964200-94965600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr13:94964200-94965600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr13:94964200-94965600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr13:94964200-94965800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr13:94964200-94965800	Enhancers	HSMMtube	muscle
34	chr13:94964200-94966200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr13:94964200-94966200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr13:94964200-94969000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr13:94964600-94965000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr13:94964600-94965000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr13:94964600-94965200	Flanking Active TSS	GM12878-XiMat	blood
40	chr13:94964600-94965400	Enhancers	Ovary	ovary
41	chr13:94964600-94966000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr13:94964800-94965000	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr13:94964800-94965000	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr13:94964800-94965000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr13:94964800-94965000	Flanking Active TSS	Fetal Brain Male	brain
46	chr13:94964800-94965200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr13:94964800-94965200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr13:94964800-94965200	Flanking Active TSS	Brain Substantia Nigra	brain
49	chr13:94964800-94965400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr13:94964800-94965400	Active TSS	Brain Anterior Caudate	brain

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