Variant report

Variant	rs9524438
Chromosome Location	chr13:94976551-94976552
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17175238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17175245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335845	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516383	1.00[CEU][hapmap]
rs9516385	1.00[AMR][1000 genomes]
rs9516387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516390	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524403	1.00[CEU][hapmap]
rs9524413	1.00[CEU][hapmap]
rs9524419	1.00[CEU][hapmap]
rs9524420	1.00[CEU][hapmap]
rs9524425	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524436	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584214	0.85[CHB][hapmap]
rs9645929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
2	chr13:94965400-94977400	Weak transcription	Fetal Kidney	kidney
3	chr13:94965800-94979600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:94966200-94977200	Weak transcription	Adipose Nuclei	Adipose
5	chr13:94969400-94979400	Weak transcription	Fetal Stomach	stomach
6	chr13:94969800-94978000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:94969800-94978400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:94969800-94979200	Weak transcription	Fetal Lung	lung
9	chr13:94969800-94981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:94970600-94977400	Weak transcription	NH-A	brain
11	chr13:94970800-94977200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:94971200-94979400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:94971400-94977200	Weak transcription	Osteobl	bone
14	chr13:94971400-94979400	Weak transcription	HSMM	muscle
15	chr13:94971600-94976800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:94972000-94976600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:94973000-94982200	Weak transcription	Pancreas	Pancrea
18	chr13:94974400-94979600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr13:94974600-94982000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:94975000-94977200	Enhancers	Dnd41	blood
21	chr13:94975000-94978200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr13:94975000-94979200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr13:94975000-94979400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:94975000-94979400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr13:94975000-94979600	Enhancers	Primary B cells from peripheral blood	blood
26	chr13:94975000-94979600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:94975000-94980600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:94975000-94980800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:94975000-94980800	Enhancers	Thymus	Thymus
30	chr13:94975000-94981800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:94975200-94976800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:94975200-94977600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr13:94975200-94978000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:94975400-94978800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr13:94975400-94979600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr13:94975600-94977000	Weak transcription	NHDF-Ad	bronchial
37	chr13:94975600-94977600	Enhancers	Primary B cells from cord blood	blood
38	chr13:94975600-94981000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:94975800-94976600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr13:94975800-94977200	Enhancers	Primary hematopoietic stem cells	blood
41	chr13:94976000-94983200	Enhancers	HSMMtube	muscle
42	chr13:94976200-94976600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr13:94976200-94976600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr13:94976200-94976600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:94976200-94976600	Flanking Active TSS	Fetal Thymus	thymus
46	chr13:94976200-94976600	ZNF genes & repeats	GM12878-XiMat	blood
47	chr13:94976200-94976800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr13:94976200-94976800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:94976200-94977000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr13:94976200-94977000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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