Variant report

Variant	rs17175238
Chromosome Location	chr13:94970341-94970342
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11839525	1.00[CEU][hapmap]
rs17175245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17253794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7324370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335845	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336410	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516383	1.00[CEU][hapmap]
rs9516385	1.00[AMR][1000 genomes]
rs9516387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516390	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524403	1.00[CEU][hapmap]
rs9524413	1.00[CEU][hapmap]
rs9524419	1.00[CEU][hapmap]
rs9524420	1.00[CEU][hapmap]
rs9524425	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9524432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524436	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584214	0.85[CHB][hapmap]
rs9645929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948455	chr13:94451368-94988900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94958800-94981600	Weak transcription	Spleen	Spleen
2	chr13:94964000-94973200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94965400-94977400	Weak transcription	Fetal Kidney	kidney
4	chr13:94965800-94979600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr13:94966200-94977200	Weak transcription	Adipose Nuclei	Adipose
6	chr13:94968200-94975000	Weak transcription	Thymus	Thymus
7	chr13:94969000-94970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:94969000-94970400	Enhancers	NHLF	lung
9	chr13:94969000-94970600	Enhancers	Fetal Thymus	thymus
10	chr13:94969000-94970600	Enhancers	NH-A	brain
11	chr13:94969000-94971000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:94969000-94971000	Enhancers	NHDF-Ad	bronchial
13	chr13:94969000-94971200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:94969000-94971400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:94969000-94971400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:94969000-94971400	Enhancers	Osteobl	bone
17	chr13:94969000-94971600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:94969000-94971600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:94969200-94970400	Enhancers	Primary T cells from cord blood	blood
20	chr13:94969200-94970600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr13:94969200-94971400	Enhancers	HSMM	muscle
22	chr13:94969400-94974400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr13:94969400-94979400	Weak transcription	Fetal Stomach	stomach
24	chr13:94969600-94970600	Enhancers	GM12878-XiMat	blood
25	chr13:94969800-94970600	Enhancers	HSMMtube	muscle
26	chr13:94969800-94975000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr13:94969800-94975000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:94969800-94975200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:94969800-94978000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:94969800-94978400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:94969800-94979200	Weak transcription	Fetal Lung	lung
32	chr13:94969800-94981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:94970000-94974200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr13:94970200-94970800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:94970200-94975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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