Variant report

Variant	rs9588002
Chromosome Location	chr13:110488822-110488823
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1023305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1023306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12184672	1.00[EUR][1000 genomes]
rs1335612	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1335613	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358854	0.89[AFR][1000 genomes]
rs7358932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73608783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7982658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7983073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7989371	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990525	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8002388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9301413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9587996	1.00[EUR][1000 genomes]
rs9587999	1.00[EUR][1000 genomes]
rs9588000	1.00[EUR][1000 genomes]
rs9588001	1.00[AMR][1000 genomes]
rs9588003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9588007	1.00[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110473800-110489200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:110487400-110489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:110488200-110489400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:110488400-110489800	Enhancers	Fetal Intestine Large	intestine
5	chr13:110488400-110490000	Enhancers	Fetal Intestine Small	intestine
6	chr13:110488400-110496200	Weak transcription	Aorta	Aorta
7	chr13:110488600-110489600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr13:110488800-110489200	Enhancers	Duodenum Mucosa	Duodenum

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