Variant report

Variant	rs9588007
Chromosome Location	chr13:110495517-110495518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1023305	1.00[EUR][1000 genomes]
rs1023306	1.00[EUR][1000 genomes]
rs12184672	1.00[EUR][1000 genomes]
rs1335612	1.00[EUR][1000 genomes]
rs1335613	1.00[EUR][1000 genomes]
rs1967912	1.00[EUR][1000 genomes]
rs7317464	1.00[EUR][1000 genomes]
rs7317502	1.00[EUR][1000 genomes]
rs7317716	1.00[EUR][1000 genomes]
rs7331580	1.00[EUR][1000 genomes]
rs7332843	1.00[EUR][1000 genomes]
rs7358932	1.00[EUR][1000 genomes]
rs7358936	1.00[EUR][1000 genomes]
rs7358951	1.00[EUR][1000 genomes]
rs73608783	1.00[EUR][1000 genomes]
rs7982658	1.00[EUR][1000 genomes]
rs7983073	1.00[EUR][1000 genomes]
rs7984046	1.00[EUR][1000 genomes]
rs7986269	1.00[EUR][1000 genomes]
rs7986378	1.00[EUR][1000 genomes]
rs7986897	1.00[EUR][1000 genomes]
rs7989371	1.00[EUR][1000 genomes]
rs7990525	1.00[EUR][1000 genomes]
rs7997262	1.00[EUR][1000 genomes]
rs7999146	1.00[EUR][1000 genomes]
rs8002388	1.00[EUR][1000 genomes]
rs9301413	1.00[EUR][1000 genomes]
rs9583429	1.00[EUR][1000 genomes]
rs9583430	1.00[EUR][1000 genomes]
rs9583431	1.00[EUR][1000 genomes]
rs9587996	1.00[EUR][1000 genomes]
rs9587999	1.00[EUR][1000 genomes]
rs9588000	1.00[EUR][1000 genomes]
rs9588002	1.00[EUR][1000 genomes]
rs9588003	1.00[EUR][1000 genomes]
rs9588004	1.00[EUR][1000 genomes]
rs9588005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976222	chr13:110495093-110499364	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110488400-110496200	Weak transcription	Aorta	Aorta
2	chr13:110489600-110497200	Weak transcription	Stomach Mucosa	stomach
3	chr13:110492800-110496600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:110493000-110495600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:110493000-110496600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:110493000-110497800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:110493200-110498600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:110493200-110499200	Weak transcription	Right Atrium	heart
9	chr13:110493600-110496200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:110493600-110496600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:110493600-110496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:110493600-110496600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:110493600-110496600	Weak transcription	Osteobl	bone
14	chr13:110493800-110496800	Weak transcription	HMEC	breast
15	chr13:110493800-110497000	Weak transcription	NH-A	brain
16	chr13:110494000-110496000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:110494000-110497000	Weak transcription	HSMMtube	muscle
18	chr13:110494800-110496600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:110494800-110496600	Weak transcription	HSMM	muscle
20	chr13:110495200-110495800	Enhancers	Right Ventricle	heart

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