Variant report

Variant	rs9588735
Chromosome Location	chr13:90379185-90379186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs55652459	1.00[AMR][1000 genomes]
rs55924547	1.00[AMR][1000 genomes]
rs56067637	1.00[AMR][1000 genomes]
rs56829002	1.00[AMR][1000 genomes]
rs57359325	1.00[AMR][1000 genomes]
rs57906035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58564246	1.00[AMR][1000 genomes]
rs58749578	1.00[AMR][1000 genomes]
rs58875521	1.00[AMR][1000 genomes]
rs59272959	1.00[AMR][1000 genomes]
rs59714296	1.00[AMR][1000 genomes]
rs59889696	1.00[AMR][1000 genomes]
rs60034098	1.00[AMR][1000 genomes]
rs60443681	1.00[AMR][1000 genomes]
rs60892733	1.00[AMR][1000 genomes]
rs74108785	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74108795	1.00[AMR][1000 genomes]
rs74108796	1.00[AMR][1000 genomes]
rs74108804	1.00[AMR][1000 genomes]
rs74108805	1.00[AMR][1000 genomes]
rs74108807	1.00[AMR][1000 genomes]
rs74108808	1.00[AMR][1000 genomes]
rs74108809	1.00[AMR][1000 genomes]
rs74108810	1.00[AMR][1000 genomes]
rs74108811	1.00[AMR][1000 genomes]
rs74108814	1.00[AMR][1000 genomes]
rs74108815	1.00[AMR][1000 genomes]
rs74108817	1.00[AMR][1000 genomes]
rs74108818	1.00[AMR][1000 genomes]
rs74108819	1.00[AMR][1000 genomes]
rs74108820	1.00[AMR][1000 genomes]
rs74108821	1.00[AMR][1000 genomes]
rs74108822	1.00[AMR][1000 genomes]
rs74108823	1.00[AMR][1000 genomes]
rs74108829	1.00[AMR][1000 genomes]
rs74108832	1.00[AMR][1000 genomes]
rs74108837	1.00[AMR][1000 genomes]
rs74108838	1.00[AMR][1000 genomes]
rs74109778	1.00[AMR][1000 genomes]
rs74109783	1.00[AMR][1000 genomes]
rs74110935	1.00[AMR][1000 genomes]
rs74110937	1.00[AMR][1000 genomes]
rs74110942	1.00[AMR][1000 genomes]
rs74110943	1.00[AMR][1000 genomes]
rs74110944	1.00[AMR][1000 genomes]
rs74110946	1.00[AMR][1000 genomes]
rs74110947	1.00[AMR][1000 genomes]
rs74110950	1.00[AMR][1000 genomes]
rs74110951	1.00[AMR][1000 genomes]
rs74110952	1.00[AMR][1000 genomes]
rs74110954	1.00[AMR][1000 genomes]
rs74110955	1.00[AMR][1000 genomes]
rs74110956	1.00[AMR][1000 genomes]
rs74110957	1.00[AMR][1000 genomes]
rs74110959	1.00[AMR][1000 genomes]
rs74110960	1.00[AMR][1000 genomes]
rs74110961	1.00[AMR][1000 genomes]
rs74110964	1.00[AMR][1000 genomes]
rs74110965	1.00[AMR][1000 genomes]
rs74110968	1.00[AMR][1000 genomes]
rs74111440	1.00[AMR][1000 genomes]
rs9583718	0.94[AFR][1000 genomes]
rs9583719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583720	0.94[AFR][1000 genomes]
rs9583721	0.94[AFR][1000 genomes]
rs9583722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583723	0.94[AFR][1000 genomes]
rs9583724	0.94[AFR][1000 genomes]
rs9583726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588723	0.94[AFR][1000 genomes]
rs9588724	0.94[AFR][1000 genomes]
rs9588725	0.94[AFR][1000 genomes]
rs9588726	0.94[AFR][1000 genomes]
rs9588727	0.94[AFR][1000 genomes]
rs9588728	0.94[AFR][1000 genomes]
rs9588729	0.94[AFR][1000 genomes]
rs9588731	0.94[AFR][1000 genomes]
rs9588733	0.94[AFR][1000 genomes]
rs9588734	0.94[AFR][1000 genomes]
rs9588736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588738	1.00[AMR][1000 genomes]
rs9588739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9588740	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1038484	chr13:90288352-90399591	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv456060	chr13:90309159-90392614	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv562641	chr13:90309159-90392614	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv900866	chr13:90325420-90432585	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900867	chr13:90338898-90432585	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv456061	chr13:90355675-90448341	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv562642	chr13:90355675-90448341	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90375600-90389600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:90378400-90379800	Enhancers	HMEC	breast
3	chr13:90378800-90379200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr13:90379000-90379800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:90379000-90380000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links