Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508653	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013123	0.91[ASN][1000 genomes]
rs11013124	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11013125	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12240894	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12248702	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12266336	0.91[ASN][1000 genomes]
rs12266776	0.91[ASN][1000 genomes]
rs12267858	0.91[ASN][1000 genomes]
rs1343505	0.95[EUR][1000 genomes]
rs16922694	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16922697	0.91[ASN][1000 genomes]
rs2068726	0.90[EUR][1000 genomes]
rs56310787	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58847346	0.81[EUR][1000 genomes]
rs59573145	0.90[EUR][1000 genomes]
rs59760845	0.91[ASN][1000 genomes]
rs6482231	0.81[EUR][1000 genomes]
rs6482237	0.90[EUR][1000 genomes]
rs67864649	0.95[EUR][1000 genomes]
rs7070712	0.81[EUR][1000 genomes]
rs7078244	0.95[EUR][1000 genomes]
rs72816902	1.00[EUR][1000 genomes]
rs74121610	0.91[ASN][1000 genomes]
rs74121611	0.91[ASN][1000 genomes]
rs7906229	0.90[EUR][1000 genomes]
rs7917205	0.90[EUR][1000 genomes]
rs9651372	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23049000-23051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:23050000-23050400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:23050000-23050400	Enhancers	Brain Cingulate Gyrus	brain
4	chr10:23050000-23051200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23050000-23051200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:23050000-23051200	Enhancers	K562	blood
7	chr10:23050000-23051600	Enhancers	Brain Angular Gyrus	brain
8	chr10:23050000-23051600	Enhancers	Brain Substantia Nigra	brain
9	chr10:23050000-23052400	Enhancers	Brain Hippocampus Middle	brain
10	chr10:23050200-23051200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:23050200-23051400	Enhancers	Brain Anterior Caudate	brain
12	chr10:23050200-23051800	Enhancers	Brain Inferior Temporal Lobe	brain

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