Variant report

Variant	rs59760845
Chromosome Location	chr10:23058203-23058204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10508653	0.83[ASN][1000 genomes]
rs11013123	1.00[ASN][1000 genomes]
rs11013124	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013125	0.83[ASN][1000 genomes]
rs12240894	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12248702	0.83[ASN][1000 genomes]
rs12256270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922619	0.83[EUR][1000 genomes]
rs16922629	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922641	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922694	0.83[ASN][1000 genomes]
rs16922697	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2032026	0.83[EUR][1000 genomes]
rs2032027	0.83[EUR][1000 genomes]
rs55855627	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56310787	1.00[ASN][1000 genomes]
rs58587913	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58854363	0.83[EUR][1000 genomes]
rs59134467	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59278361	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61295423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61587496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121608	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121869	0.83[EUR][1000 genomes]
rs74121889	0.83[EUR][1000 genomes]
rs74121891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121893	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121894	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121897	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125205	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74125206	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9651370	0.91[ASN][1000 genomes]
rs9651372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23057400-23058800	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:23057600-23059000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:23057600-23059200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:23057800-23058800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23057800-23059400	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links