Variant report

Variant	rs55855627
Chromosome Location	chr10:23029318-23029319
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11013124	1.00[EUR][1000 genomes]
rs12240894	1.00[EUR][1000 genomes]
rs12256270	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12266336	1.00[EUR][1000 genomes]
rs12266776	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267858	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1343505	1.00[ASN][1000 genomes]
rs1544228	0.95[ASN][1000 genomes]
rs16922558	0.82[ASN][1000 genomes]
rs16922574	0.82[ASN][1000 genomes]
rs16922619	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16922627	0.93[ASN][1000 genomes]
rs16922629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16922631	0.93[ASN][1000 genomes]
rs16922641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16922673	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922697	1.00[EUR][1000 genomes]
rs2032026	0.83[EUR][1000 genomes]
rs2032027	0.83[EUR][1000 genomes]
rs2068726	0.95[ASN][1000 genomes]
rs2153534	0.91[ASN][1000 genomes]
rs56412842	0.82[ASN][1000 genomes]
rs57280862	0.88[ASN][1000 genomes]
rs58587913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58847346	0.88[ASN][1000 genomes]
rs58854363	0.83[EUR][1000 genomes]
rs59134467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59278361	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59573145	0.95[ASN][1000 genomes]
rs59760845	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908513	0.88[ASN][1000 genomes]
rs60284138	0.82[ASN][1000 genomes]
rs61295423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61587496	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482231	0.98[ASN][1000 genomes]
rs6482237	0.95[ASN][1000 genomes]
rs67864649	1.00[ASN][1000 genomes]
rs7070712	0.93[ASN][1000 genomes]
rs7078244	1.00[ASN][1000 genomes]
rs72816902	1.00[ASN][1000 genomes]
rs73598599	0.93[ASN][1000 genomes]
rs73598600	0.93[ASN][1000 genomes]
rs73598601	0.93[ASN][1000 genomes]
rs73600503	0.93[ASN][1000 genomes]
rs74121608	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74121610	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121611	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121869	0.83[EUR][1000 genomes]
rs74121889	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74121897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74125205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74125206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906229	0.95[ASN][1000 genomes]
rs7917205	0.95[ASN][1000 genomes]
rs9651372	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23020000-23029800	Weak transcription	Stomach Mucosa	stomach
2	chr10:23028000-23031400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:23028200-23031000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:23028600-23031000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:23029200-23029600	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links