Variant report

Variant	rs16922574
Chromosome Location	chr10:22950784-22950785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22948750..22951545-chr10:22955363..22957165,2	MCF-7	breast:
2	chr10:22949069..22952747-chr10:22952895..22957056,4	K562	blood:
3	chr10:22947010..22949481-chr10:22949817..22951993,3	K562	blood:
4	chr10:22918935..22920512-chr10:22949554..22952009,2	K562	blood:
5	chr10:22947999..22952068-chr10:22969856..22973732,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf115-3	chr10:22950672-22950804	NONHSAT011756

No data

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10508649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11013053	0.85[JPT][hapmap]
rs1343505	0.82[ASN][1000 genomes]
rs1539628	0.82[JPT][hapmap]
rs16922558	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16922601	1.00[CEU][hapmap]
rs16922612	1.00[CEU][hapmap];0.84[YRI][hapmap]
rs16922619	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16922627	0.88[ASN][1000 genomes]
rs16922629	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16922641	0.84[ASN][1000 genomes]
rs16922673	0.82[ASN][1000 genomes]
rs1750747	0.85[JPT][hapmap]
rs1750775	0.85[JPT][hapmap]
rs2032026	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2032027	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2154053	0.85[JPT][hapmap]
rs55855627	0.82[ASN][1000 genomes]
rs56412842	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56928466	0.84[ASN][1000 genomes]
rs57280862	0.84[ASN][1000 genomes]
rs57364753	0.84[ASN][1000 genomes]
rs58587913	0.84[ASN][1000 genomes]
rs58650388	0.81[ASN][1000 genomes]
rs58847346	0.84[ASN][1000 genomes]
rs58851815	0.84[ASN][1000 genomes]
rs59134467	0.82[ASN][1000 genomes]
rs59278361	0.82[ASN][1000 genomes]
rs59908513	0.84[ASN][1000 genomes]
rs60284138	1.00[ASN][1000 genomes]
rs61295423	0.82[ASN][1000 genomes]
rs61587496	0.82[ASN][1000 genomes]
rs6482231	0.84[ASN][1000 genomes]
rs67864649	0.82[ASN][1000 genomes]
rs7078244	0.82[ASN][1000 genomes]
rs7078735	1.00[CEU][hapmap]
rs72816902	0.82[ASN][1000 genomes]
rs73598599	0.88[ASN][1000 genomes]
rs73598600	0.88[ASN][1000 genomes]
rs73598601	0.88[ASN][1000 genomes]
rs74121814	0.84[ASN][1000 genomes]
rs74121818	0.84[ASN][1000 genomes]
rs74121820	0.84[ASN][1000 genomes]
rs74121889	0.88[ASN][1000 genomes]
rs74121891	0.88[ASN][1000 genomes]
rs74121893	0.88[ASN][1000 genomes]
rs74121894	0.88[ASN][1000 genomes]
rs74121897	0.88[ASN][1000 genomes]
rs74125205	0.88[ASN][1000 genomes]
rs74125206	0.88[ASN][1000 genomes]
rs7914338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
3	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
7	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
8	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
9	chr10:22943400-22952200	Enhancers	Brain Angular Gyrus	brain
10	chr10:22944800-22951600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:22944800-22951800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:22945000-22951800	Weak transcription	Esophagus	oesophagus
13	chr10:22945000-22955200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:22945000-22955200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr10:22945000-22955200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:22945000-22955200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:22945000-22955400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:22945000-22956800	Weak transcription	Gastric	stomach
19	chr10:22945000-22958000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:22945200-22955000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:22945200-22955200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:22945400-22951600	Weak transcription	Fetal Stomach	stomach
23	chr10:22945400-22951800	Weak transcription	Small Intestine	intestine
24	chr10:22945400-22955400	Weak transcription	Fetal Kidney	kidney
25	chr10:22945400-22958400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:22946200-22951600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:22946200-22961600	Weak transcription	Aorta	Aorta
28	chr10:22946600-22955000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr10:22946800-22951800	Weak transcription	HSMMtube	muscle
30	chr10:22947000-22951000	Weak transcription	Fetal Lung	lung
31	chr10:22947200-22953200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr10:22947200-22954200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:22947200-22955000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr10:22947400-22951000	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:22947400-22951600	Enhancers	Primary T cells from cord blood	blood
36	chr10:22947400-22955400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:22947800-22950800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:22947800-22955000	Weak transcription	Primary B cells from cord blood	blood
39	chr10:22948000-22953400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:22948000-22961400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:22948200-22951200	Weak transcription	HepG2	liver
42	chr10:22948200-22951800	Weak transcription	NHLF	lung
43	chr10:22948200-22952000	Weak transcription	NHDF-Ad	bronchial
44	chr10:22948200-22953600	Weak transcription	Dnd41	blood
45	chr10:22948200-22955600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:22948200-22958400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:22948400-22952000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:22948600-22951600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:22948600-22951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:22948600-22953600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links