Variant report

Variant	rs73598601
Chromosome Location	chr10:23008297-23008298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23006228..23008699-chr10:23011054..23014038,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1343505	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1544228	0.89[ASN][1000 genomes]
rs16922558	0.88[ASN][1000 genomes]
rs16922574	0.88[ASN][1000 genomes]
rs16922619	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922629	1.00[ASN][1000 genomes]
rs16922631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16922641	0.95[ASN][1000 genomes]
rs16922673	0.93[ASN][1000 genomes]
rs2032026	0.86[EUR][1000 genomes]
rs2032027	0.86[EUR][1000 genomes]
rs2068726	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2153534	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55855627	0.93[ASN][1000 genomes]
rs56412842	0.88[ASN][1000 genomes]
rs57280862	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58587913	0.95[ASN][1000 genomes]
rs58847346	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59134467	0.93[ASN][1000 genomes]
rs59278361	0.93[ASN][1000 genomes]
rs59573145	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59908513	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60284138	0.88[ASN][1000 genomes]
rs61295423	0.93[ASN][1000 genomes]
rs61587496	0.93[ASN][1000 genomes]
rs6482231	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6482237	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67864649	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7070712	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7078244	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs72816902	0.93[ASN][1000 genomes]
rs73598599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73598600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73600503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74121608	0.90[ASN][1000 genomes]
rs74121869	0.86[EUR][1000 genomes]
rs74121889	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121891	1.00[ASN][1000 genomes]
rs74121893	1.00[ASN][1000 genomes]
rs74121894	1.00[ASN][1000 genomes]
rs74121897	1.00[ASN][1000 genomes]
rs74125205	1.00[ASN][1000 genomes]
rs74125206	1.00[ASN][1000 genomes]
rs7906229	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7914338	0.86[ASN][1000 genomes]
rs7917205	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004200-23011600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:23004400-23008400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:23004400-23009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:23004400-23009600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:23004400-23009600	Weak transcription	Brain Angular Gyrus	brain
8	chr10:23004400-23010600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:23004400-23011600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
12	chr10:23004600-23009400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr10:23004800-23009600	Weak transcription	GM12878-XiMat	blood
14	chr10:23008000-23009400	Weak transcription	K562	blood
15	chr10:23008200-23008400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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