Variant report

Variant	rs7914338
Chromosome Location	chr10:22944307-22944308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22925448..22927926-chr10:22944270..22946510,2	MCF-7	breast:
2	chr10:22941879..22944846-chr10:22946582..22948906,3	K562	blood:
3	chr10:22943900..22945955-chr10:23001727..23004467,2	K562	blood:
4	chr10:22942890..22944748-chr10:22969639..22971287,2	MCF-7	breast:
5	chr10:22940458..22943239-chr10:22943736..22945993,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10508648	1.00[GIH][hapmap]
rs10508649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11013053	0.85[JPT][hapmap]
rs1539628	0.82[JPT][hapmap]
rs16922558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16922574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16922601	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap]
rs16922612	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs16922619	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16922627	0.86[ASN][1000 genomes]
rs16922629	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16922641	0.82[ASN][1000 genomes]
rs1750747	0.85[JPT][hapmap]
rs1750775	0.85[JPT][hapmap]
rs2032026	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs2032027	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs2154053	0.85[JPT][hapmap]
rs56412842	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56928466	0.82[ASN][1000 genomes]
rs57280862	0.82[ASN][1000 genomes]
rs57364753	0.82[ASN][1000 genomes]
rs58587913	0.82[ASN][1000 genomes]
rs58847346	0.82[ASN][1000 genomes]
rs58851815	0.82[ASN][1000 genomes]
rs59908513	0.82[ASN][1000 genomes]
rs60284138	0.98[ASN][1000 genomes]
rs6482231	0.82[ASN][1000 genomes]
rs7078735	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.85[MEX][hapmap]
rs73598599	0.86[ASN][1000 genomes]
rs73598600	0.86[ASN][1000 genomes]
rs73598601	0.86[ASN][1000 genomes]
rs74121814	0.82[ASN][1000 genomes]
rs74121818	0.82[ASN][1000 genomes]
rs74121820	0.82[ASN][1000 genomes]
rs74121889	0.86[ASN][1000 genomes]
rs74121891	0.86[ASN][1000 genomes]
rs74121893	0.86[ASN][1000 genomes]
rs74121894	0.86[ASN][1000 genomes]
rs74121897	0.86[ASN][1000 genomes]
rs74125205	0.86[ASN][1000 genomes]
rs74125206	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
3	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
5	chr10:22936400-22958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:22936800-22944600	Weak transcription	Gastric	stomach
7	chr10:22936800-22944800	Enhancers	Primary B cells from cord blood	blood
8	chr10:22937000-22944800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr10:22937800-22944400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:22937800-22947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:22937800-22951200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:22937800-22955200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:22938000-22944600	Weak transcription	Fetal Heart	heart
14	chr10:22938200-22947800	Weak transcription	NH-A	brain
15	chr10:22938600-22944400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:22938600-22944400	Weak transcription	Osteobl	bone
17	chr10:22938800-22944600	Weak transcription	Colonic Mucosa	Colon
18	chr10:22938800-22946800	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:22938800-22949400	Weak transcription	HMEC	breast
20	chr10:22938800-22949600	Weak transcription	NHEK	skin
21	chr10:22939000-22946000	Weak transcription	Psoas Muscle	Psoas
22	chr10:22939000-22947600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:22939400-22944400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:22939400-22945200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:22940800-22951800	Weak transcription	Left Ventricle	heart
26	chr10:22941000-22944400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:22941000-22945800	Weak transcription	HSMM	muscle
28	chr10:22941000-22947800	Weak transcription	HepG2	liver
29	chr10:22941400-22945800	Weak transcription	HSMMtube	muscle
30	chr10:22941600-22945800	Genic enhancers	GM12878-XiMat	blood
31	chr10:22941600-22949200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:22942000-22946800	Enhancers	Fetal Thymus	thymus
33	chr10:22942000-22952800	Enhancers	Brain Hippocampus Middle	brain
34	chr10:22942200-22944400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:22942200-22945000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:22942200-22945000	Enhancers	Duodenum Mucosa	Duodenum
37	chr10:22942400-22944400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:22942400-22944800	Weak transcription	Aorta	Aorta
39	chr10:22942400-22947400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr10:22942400-22947600	Weak transcription	Adipose Nuclei	Adipose
41	chr10:22942400-22959800	Weak transcription	Right Ventricle	heart
42	chr10:22942600-22944400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr10:22942600-22944600	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr10:22942600-22945600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr10:22942600-22947400	Weak transcription	Dnd41	blood
46	chr10:22942600-22947600	Weak transcription	K562	blood
47	chr10:22942600-22949200	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr10:22942600-22949400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:22942800-22944800	Weak transcription	Spleen	Spleen
50	chr10:22942800-22947800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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