Variant report

Variant	rs16922629
Chromosome Location	chr10:23012096-23012097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23000525..23003741-chr10:23009188..23012345,5	MCF-7	breast:
2	chr10:23006228..23008699-chr10:23011054..23014038,2	K562	blood:
3	chr10:23010619..23013032-chr10:23343803..23345736,2	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10508648	1.00[GIH][hapmap]
rs10508649	1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11013053	0.85[JPT][hapmap]
rs11013124	1.00[EUR][1000 genomes]
rs12240894	1.00[EUR][1000 genomes]
rs12256270	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12259546	1.00[YRI][hapmap]
rs12266336	1.00[EUR][1000 genomes]
rs12266776	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267858	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1343505	0.93[ASN][1000 genomes]
rs1539628	0.82[JPT][hapmap]
rs1544228	0.89[ASN][1000 genomes]
rs16922558	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16922574	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16922601	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16922612	1.00[CEU][hapmap]
rs16922619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922627	1.00[ASN][1000 genomes]
rs16922631	0.91[ASN][1000 genomes]
rs16922641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16922673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16922697	1.00[EUR][1000 genomes]
rs1750747	0.85[JPT][hapmap]
rs1750775	0.85[JPT][hapmap]
rs2032026	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2032027	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2068726	0.89[ASN][1000 genomes]
rs2153534	0.84[ASN][1000 genomes]
rs2154053	0.85[JPT][hapmap]
rs55855627	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56412842	0.88[ASN][1000 genomes]
rs57280862	0.95[ASN][1000 genomes]
rs58587913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58847346	0.95[ASN][1000 genomes]
rs58854363	0.83[EUR][1000 genomes]
rs59134467	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59278361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59573145	0.89[ASN][1000 genomes]
rs59760845	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908513	0.95[ASN][1000 genomes]
rs60284138	0.88[ASN][1000 genomes]
rs61295423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61587496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482231	0.95[ASN][1000 genomes]
rs6482237	0.89[ASN][1000 genomes]
rs67864649	0.93[ASN][1000 genomes]
rs7070712	0.91[ASN][1000 genomes]
rs7078244	0.93[ASN][1000 genomes]
rs7078735	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs72816902	0.93[ASN][1000 genomes]
rs73598599	1.00[ASN][1000 genomes]
rs73598600	1.00[ASN][1000 genomes]
rs73598601	1.00[ASN][1000 genomes]
rs73600503	0.91[ASN][1000 genomes]
rs74121608	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74121610	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121611	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121869	0.83[EUR][1000 genomes]
rs74121889	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74121897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74125205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74125206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906229	0.89[ASN][1000 genomes]
rs7914338	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7917205	0.89[ASN][1000 genomes]
rs9651372	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23016400	Weak transcription	Brain Anterior Caudate	brain
2	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
3	chr10:23009800-23016600	Weak transcription	Brain Angular Gyrus	brain
4	chr10:23010600-23014000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:23011200-23012400	Enhancers	HepG2	liver
6	chr10:23011400-23012400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:23011400-23013200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr10:23011400-23014000	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:23011600-23012400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:23011600-23012600	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:23011600-23012600	Enhancers	Fetal Thymus	thymus
12	chr10:23011600-23012600	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:23011600-23013200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:23011600-23013600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:23011800-23012200	Enhancers	Primary B cells from cord blood	blood
16	chr10:23011800-23012400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr10:23011800-23012600	Enhancers	Primary T cells from cord blood	blood
18	chr10:23011800-23012600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:23011800-23012600	Enhancers	Fetal Kidney	kidney
20	chr10:23011800-23013000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr10:23012000-23012200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr10:23012000-23012600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:23012000-23013000	Enhancers	Primary neutrophils fromperipheralblood	blood

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