Variant report

Variant	rs2153534
Chromosome Location	chr10:23046452-23046453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23039009..23041955-chr10:23046349..23048617,2	MCF-7	breast:
2	chr10:22989774..22994119-chr10:23044705..23049476,4	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10508653	0.83[EUR][1000 genomes]
rs11013125	0.83[EUR][1000 genomes]
rs12248702	0.83[EUR][1000 genomes]
rs1343505	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1544228	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16922619	0.84[ASN][1000 genomes]
rs16922627	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16922629	0.84[ASN][1000 genomes]
rs16922631	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16922641	0.88[ASN][1000 genomes]
rs16922673	0.91[ASN][1000 genomes]
rs16922694	0.87[EUR][1000 genomes]
rs2068726	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55855627	0.91[ASN][1000 genomes]
rs56310787	0.87[EUR][1000 genomes]
rs57280862	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58587913	0.88[ASN][1000 genomes]
rs58847346	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs59134467	0.91[ASN][1000 genomes]
rs59278361	0.91[ASN][1000 genomes]
rs59573145	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59908513	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61295423	0.91[ASN][1000 genomes]
rs61587496	0.91[ASN][1000 genomes]
rs6482231	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6482237	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67864649	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7070712	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7078244	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72816902	0.91[ASN][1000 genomes]
rs73598599	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73598600	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73598601	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73600503	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs74121608	0.88[ASN][1000 genomes]
rs74121889	0.84[ASN][1000 genomes]
rs74121891	0.84[ASN][1000 genomes]
rs74121893	0.84[ASN][1000 genomes]
rs74121894	0.84[ASN][1000 genomes]
rs74121897	0.84[ASN][1000 genomes]
rs74125205	0.84[ASN][1000 genomes]
rs74125206	0.84[ASN][1000 genomes]
rs7906229	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917205	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23043000-23048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:23043400-23047000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:23043400-23050200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:23043600-23047200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:23046000-23047200	Weak transcription	Brain Substantia Nigra	brain
6	chr10:23046000-23050000	Weak transcription	Brain Angular Gyrus	brain

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