Variant report

Variant	rs1544228
Chromosome Location	chr10:23043026-23043027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23030010..23032261-chr10:23040421..23043665,3	K562	blood:
2	chr10:23016693..23018672-chr10:23040807..23043389,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508649	1.00[JPT][hapmap]
rs11013053	0.85[JPT][hapmap]
rs1343505	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1539628	0.82[JPT][hapmap]
rs16922558	1.00[JPT][hapmap]
rs16922574	1.00[JPT][hapmap]
rs16922601	0.86[MEX][hapmap]
rs16922619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16922627	0.89[ASN][1000 genomes]
rs16922629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16922631	0.98[ASN][1000 genomes]
rs16922641	0.93[ASN][1000 genomes]
rs16922673	0.95[ASN][1000 genomes]
rs16922694	0.81[EUR][1000 genomes]
rs1750747	0.85[JPT][hapmap]
rs1750775	0.85[JPT][hapmap]
rs2068726	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153534	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2154053	0.85[JPT][hapmap]
rs55855627	0.95[ASN][1000 genomes]
rs56310787	0.81[EUR][1000 genomes]
rs57280862	0.93[ASN][1000 genomes]
rs58587913	0.93[ASN][1000 genomes]
rs58847346	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59134467	0.95[ASN][1000 genomes]
rs59278361	0.95[ASN][1000 genomes]
rs59573145	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59908513	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs61295423	0.95[ASN][1000 genomes]
rs61587496	0.95[ASN][1000 genomes]
rs6482231	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482237	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67864649	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7070712	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078244	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7078735	0.86[MEX][hapmap]
rs72816902	0.95[ASN][1000 genomes]
rs73598599	0.89[ASN][1000 genomes]
rs73598600	0.89[ASN][1000 genomes]
rs73598601	0.89[ASN][1000 genomes]
rs73600503	0.98[ASN][1000 genomes]
rs74121608	0.93[ASN][1000 genomes]
rs74121889	0.89[ASN][1000 genomes]
rs74121891	0.89[ASN][1000 genomes]
rs74121893	0.89[ASN][1000 genomes]
rs74121894	0.89[ASN][1000 genomes]
rs74121897	0.89[ASN][1000 genomes]
rs74125205	0.89[ASN][1000 genomes]
rs74125206	0.89[ASN][1000 genomes]
rs7906229	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914338	1.00[JPT][hapmap]
rs7917205	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv550211	chr10:23020350-23079385	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv550212	chr10:23030282-23086690	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23041000-23043600	Enhancers	Brain Hippocampus Middle	brain
2	chr10:23041600-23043400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr10:23042000-23043400	Enhancers	Brain Anterior Caudate	brain
4	chr10:23042000-23043600	Enhancers	HUVEC	blood vessel
5	chr10:23042600-23043600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:23042600-23043600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:23042600-23043600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:23042600-23043600	Enhancers	Adipose Nuclei	Adipose
9	chr10:23042600-23043600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:23042800-23043600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:23042800-23043800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:23043000-23043200	Weak transcription	Spleen	Spleen
13	chr10:23043000-23043400	Flanking Active TSS	Brain Substantia Nigra	brain
14	chr10:23043000-23048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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